Hb_000003_550

Information

Type -
Description -
Location Contig3: 388189-388701
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000003_550 0.0 - - -
2 Hb_001104_190 0.0799246756 - - PREDICTED: uncharacterized protein LOC105629451 [Jatropha curcas]
3 Hb_006117_080 0.0942822192 - - PREDICTED: transcription factor GTE4 isoform X1 [Jatropha curcas]
4 Hb_000321_150 0.0991612734 - - PREDICTED: uncharacterized protein LOC105645596 isoform X1 [Jatropha curcas]
5 Hb_029142_050 0.1007853283 desease resistance Gene Name: PPR PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
6 Hb_002007_160 0.1017348805 - - PREDICTED: uncharacterized protein LOC105647522 [Jatropha curcas]
7 Hb_000866_120 0.1037003443 - - PREDICTED: mediator of RNA polymerase II transcription subunit 12 [Jatropha curcas]
8 Hb_000599_190 0.1062525317 transcription factor TF Family: SNF2 DNA repair and recombination protein RAD26, putative [Ricinus communis]
9 Hb_007575_080 0.1078219375 - - PREDICTED: lysine-specific histone demethylase 1 homolog 3 [Jatropha curcas]
10 Hb_001629_060 0.1084874492 transcription factor TF Family: SWI/SNF-SWI3 Flavin-containing amine oxidase domain-containing protein, putative [Ricinus communis]
11 Hb_002872_040 0.1087191985 - - pumilio, putative [Ricinus communis]
12 Hb_001967_030 0.1105731741 - - PREDICTED: uncharacterized protein LOC105633557 [Jatropha curcas]
13 Hb_002780_010 0.1113735722 - - PREDICTED: uncharacterized protein LOC105639237 [Jatropha curcas]
14 Hb_024185_010 0.1124822993 transcription factor TF Family: PHD PREDICTED: histone acetyltransferase HAC1 isoform X1 [Jatropha curcas]
15 Hb_009150_020 0.1126373601 - - PREDICTED: uncharacterized protein LOC105630583 [Jatropha curcas]
16 Hb_000069_470 0.1127629829 - - PREDICTED: uncharacterized protein LOC105642863 isoform X1 [Jatropha curcas]
17 Hb_009767_080 0.1130230394 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105631983 [Jatropha curcas]
18 Hb_000260_070 0.1140314293 - - kinase, putative [Ricinus communis]
19 Hb_002701_040 0.114861714 - - PREDICTED: auxin transport protein BIG [Jatropha curcas]
20 Hb_000720_150 0.1154077625 - - PREDICTED: uncharacterized protein LOC105645849 isoform X3 [Jatropha curcas]

Gene co-expression network

sample Hb_000003_550 Hb_000003_550 Hb_001104_190 Hb_001104_190 Hb_000003_550--Hb_001104_190 Hb_006117_080 Hb_006117_080 Hb_000003_550--Hb_006117_080 Hb_000321_150 Hb_000321_150 Hb_000003_550--Hb_000321_150 Hb_029142_050 Hb_029142_050 Hb_000003_550--Hb_029142_050 Hb_002007_160 Hb_002007_160 Hb_000003_550--Hb_002007_160 Hb_000866_120 Hb_000866_120 Hb_000003_550--Hb_000866_120 Hb_001104_190--Hb_006117_080 Hb_000069_470 Hb_000069_470 Hb_001104_190--Hb_000069_470 Hb_003470_080 Hb_003470_080 Hb_001104_190--Hb_003470_080 Hb_001104_190--Hb_000321_150 Hb_001080_230 Hb_001080_230 Hb_001104_190--Hb_001080_230 Hb_000599_190 Hb_000599_190 Hb_001104_190--Hb_000599_190 Hb_006117_080--Hb_000069_470 Hb_009150_020 Hb_009150_020 Hb_006117_080--Hb_009150_020 Hb_006117_080--Hb_000321_150 Hb_024185_010 Hb_024185_010 Hb_006117_080--Hb_024185_010 Hb_000260_640 Hb_000260_640 Hb_006117_080--Hb_000260_640 Hb_003729_030 Hb_003729_030 Hb_000321_150--Hb_003729_030 Hb_000321_150--Hb_000069_470 Hb_000661_130 Hb_000661_130 Hb_000321_150--Hb_000661_130 Hb_009767_080 Hb_009767_080 Hb_000321_150--Hb_009767_080 Hb_000977_120 Hb_000977_120 Hb_000321_150--Hb_000977_120 Hb_029142_050--Hb_002007_160 Hb_001268_380 Hb_001268_380 Hb_029142_050--Hb_001268_380 Hb_000392_150 Hb_000392_150 Hb_029142_050--Hb_000392_150 Hb_029142_050--Hb_000866_120 Hb_000046_580 Hb_000046_580 Hb_029142_050--Hb_000046_580 Hb_002007_160--Hb_000866_120 Hb_002007_160--Hb_000599_190 Hb_002780_010 Hb_002780_010 Hb_002007_160--Hb_002780_010 Hb_010222_070 Hb_010222_070 Hb_002007_160--Hb_010222_070 Hb_002798_070 Hb_002798_070 Hb_002007_160--Hb_002798_070 Hb_000172_110 Hb_000172_110 Hb_000866_120--Hb_000172_110 Hb_000270_670 Hb_000270_670 Hb_000866_120--Hb_000270_670 Hb_002316_150 Hb_002316_150 Hb_000866_120--Hb_002316_150 Hb_000866_120--Hb_002798_070 Hb_000890_050 Hb_000890_050 Hb_000866_120--Hb_000890_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.37735 3.73612 0.459282 0.982402 1.82115 1.10743
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.03925 1.2251 1.5603 1.35695 1.70638

CAGE analysis