Hb_000003_580

Information

Type -
Description -
Location Contig3: 413555-414202
Sequence    

Annotation

kegg
ID rcu:RCOM_1490860
description hypothetical protein
nr
ID XP_002515976.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RQF7
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1490860 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000003_580 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_003086_030 0.0993039584 - - PREDICTED: fasciclin-like arabinogalactan protein 17 [Jatropha curcas]
3 Hb_003125_210 0.1119242211 - - Phospholipase C 4 precursor, putative [Ricinus communis]
4 Hb_000103_300 0.1132655337 - - PREDICTED: perakine reductase-like [Jatropha curcas]
5 Hb_000457_120 0.1146994205 - - PREDICTED: death-associated protein kinase dapk-1 [Jatropha curcas]
6 Hb_001936_120 0.115116451 - - PREDICTED: uncharacterized protein LOC105644623 isoform X1 [Jatropha curcas]
7 Hb_002284_060 0.1155905064 - - sugar transporter, putative [Ricinus communis]
8 Hb_001008_080 0.1163172957 - - PREDICTED: acyl-protein thioesterase 2 [Jatropha curcas]
9 Hb_000193_070 0.1181906962 - - hypothetical protein JCGZ_25373 [Jatropha curcas]
10 Hb_006154_010 0.1228755214 - - UDP-glucose 6-dehydrogenase, putative [Ricinus communis]
11 Hb_005305_040 0.1234880164 transcription factor TF Family: C3H transcription factor, putative [Ricinus communis]
12 Hb_002894_080 0.1251140724 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001268_150 0.1285755486 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
14 Hb_003376_140 0.1291079576 - - PREDICTED: L-type lectin-domain containing receptor kinase VIII.1 [Jatropha curcas]
15 Hb_002391_240 0.129205562 - - conserved hypothetical protein [Ricinus communis]
16 Hb_012368_050 0.1296852569 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001951_080 0.1307281489 - - O-acetyltransferase, putative [Ricinus communis]
18 Hb_000358_060 0.1321514781 - - PREDICTED: pathogenesis-related protein 5-like [Jatropha curcas]
19 Hb_001079_050 0.1329414823 - - Calmodulin, putative [Ricinus communis]
20 Hb_000152_570 0.134304224 - - 21 kDa protein precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_000003_580 Hb_000003_580 Hb_003086_030 Hb_003086_030 Hb_000003_580--Hb_003086_030 Hb_003125_210 Hb_003125_210 Hb_000003_580--Hb_003125_210 Hb_000103_300 Hb_000103_300 Hb_000003_580--Hb_000103_300 Hb_000457_120 Hb_000457_120 Hb_000003_580--Hb_000457_120 Hb_001936_120 Hb_001936_120 Hb_000003_580--Hb_001936_120 Hb_002284_060 Hb_002284_060 Hb_000003_580--Hb_002284_060 Hb_003086_030--Hb_003125_210 Hb_002894_080 Hb_002894_080 Hb_003086_030--Hb_002894_080 Hb_000030_130 Hb_000030_130 Hb_003086_030--Hb_000030_130 Hb_019516_060 Hb_019516_060 Hb_003086_030--Hb_019516_060 Hb_003086_030--Hb_000457_120 Hb_009113_080 Hb_009113_080 Hb_003125_210--Hb_009113_080 Hb_004696_010 Hb_004696_010 Hb_003125_210--Hb_004696_010 Hb_002815_020 Hb_002815_020 Hb_003125_210--Hb_002815_020 Hb_001951_080 Hb_001951_080 Hb_003125_210--Hb_001951_080 Hb_010222_040 Hb_010222_040 Hb_003125_210--Hb_010222_040 Hb_000152_570 Hb_000152_570 Hb_000103_300--Hb_000152_570 Hb_000193_070 Hb_000193_070 Hb_000103_300--Hb_000193_070 Hb_000103_300--Hb_002284_060 Hb_002391_240 Hb_002391_240 Hb_000103_300--Hb_002391_240 Hb_006154_010 Hb_006154_010 Hb_000103_300--Hb_006154_010 Hb_169077_030 Hb_169077_030 Hb_000103_300--Hb_169077_030 Hb_000928_200 Hb_000928_200 Hb_000457_120--Hb_000928_200 Hb_000457_120--Hb_001936_120 Hb_029791_010 Hb_029791_010 Hb_000457_120--Hb_029791_010 Hb_000020_200 Hb_000020_200 Hb_000457_120--Hb_000020_200 Hb_005305_040 Hb_005305_040 Hb_000457_120--Hb_005305_040 Hb_002759_030 Hb_002759_030 Hb_000457_120--Hb_002759_030 Hb_001936_120--Hb_029791_010 Hb_036520_030 Hb_036520_030 Hb_001936_120--Hb_036520_030 Hb_001936_120--Hb_005305_040 Hb_000358_060 Hb_000358_060 Hb_001936_120--Hb_000358_060 Hb_011381_050 Hb_011381_050 Hb_001936_120--Hb_011381_050 Hb_002388_070 Hb_002388_070 Hb_001936_120--Hb_002388_070 Hb_002284_060--Hb_000152_570 Hb_002284_060--Hb_000193_070 Hb_004466_090 Hb_004466_090 Hb_002284_060--Hb_004466_090 Hb_002284_060--Hb_002391_240 Hb_003894_180 Hb_003894_180 Hb_002284_060--Hb_003894_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.361096 7.27136 9.81418 36.2002 1.06889 0.0346446
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.270699 0.425556 0.125376 4.17072 18.7454

CAGE analysis