Hb_000003_600

Information

Type -
Description -
Location Contig3: 439611-444173
Sequence    

Annotation

kegg
ID rcu:RCOM_1490640
description hypothetical protein
nr
ID XP_012069096.1
description PREDICTED: protein SAWADEE HOMEODOMAIN HOMOLOG 1 [Jatropha curcas]
swissprot
ID Q9XI47
description Protein SAWADEE HOMEODOMAIN HOMOLOG 1 OS=Arabidopsis thaliana GN=SHH1 PE=1 SV=1
trembl
ID B9RQF5
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1490640 PE=4 SV=1
Gene Ontology
ID GO:0005634
description protein sawadee homeodomain homolog 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31438: 439757-440646 , PASA_asmbl_31439: 440664-444062
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000003_600 0.0 - - PREDICTED: protein SAWADEE HOMEODOMAIN HOMOLOG 1 [Jatropha curcas]
2 Hb_002639_150 0.0891218704 - - -
3 Hb_000926_310 0.0934976528 - - uncharacterized protein LOC100500241 [Glycine max]
4 Hb_003687_230 0.0962332415 - - PREDICTED: actin-depolymerizing factor-like [Jatropha curcas]
5 Hb_005288_150 0.0973775228 - - PREDICTED: casein kinase I-like isoform X3 [Jatropha curcas]
6 Hb_000390_170 0.0991508222 - - PREDICTED: V-type proton ATPase subunit H [Jatropha curcas]
7 Hb_002820_110 0.1029574274 - - PREDICTED: uncharacterized protein LOC105638918 [Jatropha curcas]
8 Hb_003020_010 0.1038076669 transcription factor TF Family: G2-like PREDICTED: transcription factor LUX [Jatropha curcas]
9 Hb_000836_170 0.104025745 - - PREDICTED: RAB6A-GEF complex partner protein 1-like [Jatropha curcas]
10 Hb_000676_050 0.1049186116 - - PREDICTED: thioredoxin domain-containing protein PLP3B-like [Gossypium raimondii]
11 Hb_001621_170 0.1052494514 - - protein binding protein, putative [Ricinus communis]
12 Hb_001427_050 0.1052903008 - - PREDICTED: probable protein arginine N-methyltransferase 1.2 [Jatropha curcas]
13 Hb_000805_120 0.1060399753 - - ubiquitin fusion degradaton protein, putative [Ricinus communis]
14 Hb_000661_140 0.1065559154 - - PREDICTED: uncharacterized protein LOC105648317 isoform X2 [Jatropha curcas]
15 Hb_007632_110 0.1086860208 - - chromatin regulatory protein sir2, putative [Ricinus communis]
16 Hb_003069_010 0.1095850392 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 2-like [Jatropha curcas]
17 Hb_000331_250 0.1098217884 - - PREDICTED: mitochondrial pyruvate carrier 1 [Vitis vinifera]
18 Hb_000141_250 0.1104087383 - - PREDICTED: oxysterol-binding protein-related protein 2A isoform X3 [Jatropha curcas]
19 Hb_002675_260 0.1121811296 - - hypothetical protein JCGZ_06227 [Jatropha curcas]
20 Hb_011013_010 0.1126663032 - - PREDICTED: calmodulin-7 isoform X1 [Vitis vinifera]

Gene co-expression network

sample Hb_000003_600 Hb_000003_600 Hb_002639_150 Hb_002639_150 Hb_000003_600--Hb_002639_150 Hb_000926_310 Hb_000926_310 Hb_000003_600--Hb_000926_310 Hb_003687_230 Hb_003687_230 Hb_000003_600--Hb_003687_230 Hb_005288_150 Hb_005288_150 Hb_000003_600--Hb_005288_150 Hb_000390_170 Hb_000390_170 Hb_000003_600--Hb_000390_170 Hb_002820_110 Hb_002820_110 Hb_000003_600--Hb_002820_110 Hb_000661_140 Hb_000661_140 Hb_002639_150--Hb_000661_140 Hb_002639_150--Hb_000926_310 Hb_002639_150--Hb_005288_150 Hb_058972_010 Hb_058972_010 Hb_002639_150--Hb_058972_010 Hb_002639_150--Hb_003687_230 Hb_020367_050 Hb_020367_050 Hb_002639_150--Hb_020367_050 Hb_000926_310--Hb_000661_140 Hb_000926_310--Hb_020367_050 Hb_000926_310--Hb_003687_230 Hb_000926_310--Hb_005288_150 Hb_000368_020 Hb_000368_020 Hb_000926_310--Hb_000368_020 Hb_000610_010 Hb_000610_010 Hb_003687_230--Hb_000610_010 Hb_003292_040 Hb_003292_040 Hb_003687_230--Hb_003292_040 Hb_000009_530 Hb_000009_530 Hb_003687_230--Hb_000009_530 Hb_001329_130 Hb_001329_130 Hb_003687_230--Hb_001329_130 Hb_003078_040 Hb_003078_040 Hb_003687_230--Hb_003078_040 Hb_000260_100 Hb_000260_100 Hb_005288_150--Hb_000260_100 Hb_000141_250 Hb_000141_250 Hb_005288_150--Hb_000141_250 Hb_005288_150--Hb_020367_050 Hb_002997_080 Hb_002997_080 Hb_005288_150--Hb_002997_080 Hb_005288_150--Hb_001329_130 Hb_008511_130 Hb_008511_130 Hb_000390_170--Hb_008511_130 Hb_000390_170--Hb_000141_250 Hb_000390_170--Hb_005288_150 Hb_003020_010 Hb_003020_010 Hb_000390_170--Hb_003020_010 Hb_006817_010 Hb_006817_010 Hb_000390_170--Hb_006817_010 Hb_002950_100 Hb_002950_100 Hb_000390_170--Hb_002950_100 Hb_000510_330 Hb_000510_330 Hb_002820_110--Hb_000510_330 Hb_002876_240 Hb_002876_240 Hb_002820_110--Hb_002876_240 Hb_017002_020 Hb_017002_020 Hb_002820_110--Hb_017002_020 Hb_000000_360 Hb_000000_360 Hb_002820_110--Hb_000000_360 Hb_008686_080 Hb_008686_080 Hb_002820_110--Hb_008686_080 Hb_000094_330 Hb_000094_330 Hb_002820_110--Hb_000094_330
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.6006 5.11607 12.7083 4.30295 7.83194 7.9226
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.7527 8.64825 5.6616 4.72819 3.08035

CAGE analysis