Hb_000003_650

Information

Type -
Description -
Location Contig3: 504045-510600
Sequence    

Annotation

kegg
ID rcu:RCOM_1489870
description malic enzyme, putative (EC:1.1.1.40)
nr
ID XP_002515967.1
description malic enzyme, putative [Ricinus communis]
swissprot
ID P51615
description NADP-dependent malic enzyme OS=Vitis vinifera PE=2 SV=1
trembl
ID B9RQE8
description Malic enzyme OS=Ricinus communis GN=RCOM_1489870 PE=3 SV=1
Gene Ontology
ID GO:0004471
description nadp-dependent malic enzyme

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31443: 504233-510627 , PASA_asmbl_31445: 504541-504663 , PASA_asmbl_31446: 509594-509816
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000003_650 0.0 - - malic enzyme, putative [Ricinus communis]
2 Hb_000065_070 0.1113562238 - - hypothetical protein CISIN_1g039077mg [Citrus sinensis]
3 Hb_000172_120 0.112781326 - - PREDICTED: uncharacterized protein LOC105650770 isoform X1 [Jatropha curcas]
4 Hb_001269_150 0.1132274125 - - PREDICTED: DCN1-like protein 4 [Jatropha curcas]
5 Hb_007441_340 0.1189429767 - - protein with unknown function [Ricinus communis]
6 Hb_000563_210 0.12105459 - - PREDICTED: mediator of RNA polymerase II transcription subunit 20a [Jatropha curcas]
7 Hb_002400_220 0.1291951807 - - Vesicle-associated membrane protein, putative [Ricinus communis]
8 Hb_000359_170 0.1300602082 - - hypothetical protein CISIN_1g014750mg [Citrus sinensis]
9 Hb_002377_040 0.1325661492 - - serine/threonine protein kinase, putative [Ricinus communis]
10 Hb_000270_360 0.1331913823 - - PREDICTED: serine/threonine-protein kinase pakF-like [Jatropha curcas]
11 Hb_000179_170 0.1352393457 - - PREDICTED: protein bem46 isoform X1 [Jatropha curcas]
12 Hb_005784_080 0.1361709617 - - kinase, putative [Ricinus communis]
13 Hb_031042_040 0.1369770698 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein ZAT4 [Jatropha curcas]
14 Hb_002942_020 0.1390559279 - - nucleotide binding protein, putative [Ricinus communis]
15 Hb_001855_010 0.1394963182 - - PREDICTED: uncharacterized protein KIAA0930 homolog isoform X2 [Jatropha curcas]
16 Hb_005271_170 0.1400806291 - - PREDICTED: tetraspanin-10 isoform X3 [Vitis vinifera]
17 Hb_076787_010 0.1402655654 - - PREDICTED: phospholipase SGR2 isoform X2 [Jatropha curcas]
18 Hb_027892_060 0.1412683309 - - PREDICTED: inter-alpha-trypsin inhibitor heavy chain H3 isoform X1 [Jatropha curcas]
19 Hb_003453_010 0.1413248482 - - conserved hypothetical protein [Ricinus communis]
20 Hb_003376_100 0.1414143421 - - PREDICTED: uncharacterized protein LOC105642192 [Jatropha curcas]

Gene co-expression network

sample Hb_000003_650 Hb_000003_650 Hb_000065_070 Hb_000065_070 Hb_000003_650--Hb_000065_070 Hb_000172_120 Hb_000172_120 Hb_000003_650--Hb_000172_120 Hb_001269_150 Hb_001269_150 Hb_000003_650--Hb_001269_150 Hb_007441_340 Hb_007441_340 Hb_000003_650--Hb_007441_340 Hb_000563_210 Hb_000563_210 Hb_000003_650--Hb_000563_210 Hb_002400_220 Hb_002400_220 Hb_000003_650--Hb_002400_220 Hb_000138_190 Hb_000138_190 Hb_000065_070--Hb_000138_190 Hb_017098_030 Hb_017098_030 Hb_000065_070--Hb_017098_030 Hb_005739_010 Hb_005739_010 Hb_000065_070--Hb_005739_010 Hb_002900_140 Hb_002900_140 Hb_000065_070--Hb_002900_140 Hb_031042_040 Hb_031042_040 Hb_000065_070--Hb_031042_040 Hb_000172_120--Hb_007441_340 Hb_004096_170 Hb_004096_170 Hb_000172_120--Hb_004096_170 Hb_003453_020 Hb_003453_020 Hb_000172_120--Hb_003453_020 Hb_000172_120--Hb_001269_150 Hb_000172_120--Hb_002400_220 Hb_002377_040 Hb_002377_040 Hb_000172_120--Hb_002377_040 Hb_001269_150--Hb_007441_340 Hb_001493_100 Hb_001493_100 Hb_001269_150--Hb_001493_100 Hb_001269_150--Hb_002400_220 Hb_000732_260 Hb_000732_260 Hb_001269_150--Hb_000732_260 Hb_004813_010 Hb_004813_010 Hb_001269_150--Hb_004813_010 Hb_007441_340--Hb_004096_170 Hb_007441_340--Hb_003453_020 Hb_007441_340--Hb_002400_220 Hb_000258_410 Hb_000258_410 Hb_007441_340--Hb_000258_410 Hb_001484_060 Hb_001484_060 Hb_000563_210--Hb_001484_060 Hb_000076_120 Hb_000076_120 Hb_000563_210--Hb_000076_120 Hb_009775_050 Hb_009775_050 Hb_000563_210--Hb_009775_050 Hb_000053_130 Hb_000053_130 Hb_000563_210--Hb_000053_130 Hb_001341_050 Hb_001341_050 Hb_000563_210--Hb_001341_050 Hb_001124_120 Hb_001124_120 Hb_000563_210--Hb_001124_120 Hb_159558_030 Hb_159558_030 Hb_002400_220--Hb_159558_030 Hb_000500_130 Hb_000500_130 Hb_002400_220--Hb_000500_130 Hb_033491_010 Hb_033491_010 Hb_002400_220--Hb_033491_010 Hb_000359_170 Hb_000359_170 Hb_002400_220--Hb_000359_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
583.335 67.8989 279.699 113.825 571.559 737.474
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
782.079 274.919 303.529 58.6458 79.6509

CAGE analysis