Hb_000003_690

Information

Type -
Description -
Location Contig3: 530320-535620
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31447: 525798-529472 , PASA_asmbl_31452: 534577-543237
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000003_690 0.0 - - -
2 Hb_075642_010 0.1511586707 - - PREDICTED: uncharacterized protein LOC105647831 [Jatropha curcas]
3 Hb_003702_050 0.1824579838 - - PREDICTED: uncharacterized protein LOC105649649 [Jatropha curcas]
4 Hb_002365_010 0.1876585476 - - hypothetical protein CISIN_1g0405342mg, partial [Citrus sinensis]
5 Hb_169488_010 0.2144706478 - - PREDICTED: choline monooxygenase, chloroplastic-like [Populus euphratica]
6 Hb_126398_010 0.2237925144 - - -
7 Hb_001981_080 0.2320852909 - - PREDICTED: mitochondrial tRNA-specific 2-thiouridylase 1 isoform X4 [Musa acuminata subsp. malaccensis]
8 Hb_005222_010 0.2402685263 - - hypothetical protein MTR_1g033950 [Medicago truncatula]
9 Hb_000002_030 0.2468356371 - - -
10 Hb_000246_140 0.2486426554 - - xylulose kinase, putative [Ricinus communis]
11 Hb_034579_010 0.249272634 - - PREDICTED: nudix hydrolase 27, chloroplastic [Jatropha curcas]
12 Hb_011537_120 0.2561734798 - - -
13 Hb_061581_010 0.2585651301 desease resistance Gene Name: ABC_tran ABC transporter family protein [Hevea brasiliensis]
14 Hb_032531_050 0.2615342681 - - hypothetical protein CICLE_v10003980mg [Citrus clementina]
15 Hb_135403_010 0.2626963479 - - HEV1.1 [Hevea brasiliensis]
16 Hb_000316_090 0.2725722571 - - -
17 Hb_032531_060 0.273295798 - - hypothetical protein PRUPE_ppa017035mg, partial [Prunus persica]
18 Hb_096490_010 0.2748607417 - - hypothetical protein CICLE_v100210772mg, partial [Citrus clementina]
19 Hb_174005_010 0.2780352409 - - hypothetical protein EUGRSUZ_D00590 [Eucalyptus grandis]
20 Hb_001544_020 0.2785822837 - - -

Gene co-expression network

sample Hb_000003_690 Hb_000003_690 Hb_075642_010 Hb_075642_010 Hb_000003_690--Hb_075642_010 Hb_003702_050 Hb_003702_050 Hb_000003_690--Hb_003702_050 Hb_002365_010 Hb_002365_010 Hb_000003_690--Hb_002365_010 Hb_169488_010 Hb_169488_010 Hb_000003_690--Hb_169488_010 Hb_126398_010 Hb_126398_010 Hb_000003_690--Hb_126398_010 Hb_001981_080 Hb_001981_080 Hb_000003_690--Hb_001981_080 Hb_000246_140 Hb_000246_140 Hb_075642_010--Hb_000246_140 Hb_075642_010--Hb_002365_010 Hb_003621_010 Hb_003621_010 Hb_075642_010--Hb_003621_010 Hb_005222_010 Hb_005222_010 Hb_075642_010--Hb_005222_010 Hb_006692_050 Hb_006692_050 Hb_075642_010--Hb_006692_050 Hb_003702_050--Hb_169488_010 Hb_063511_010 Hb_063511_010 Hb_003702_050--Hb_063511_010 Hb_001951_280 Hb_001951_280 Hb_003702_050--Hb_001951_280 Hb_003702_050--Hb_126398_010 Hb_015091_010 Hb_015091_010 Hb_003702_050--Hb_015091_010 Hb_000002_030 Hb_000002_030 Hb_002365_010--Hb_000002_030 Hb_002365_010--Hb_005222_010 Hb_000316_090 Hb_000316_090 Hb_002365_010--Hb_000316_090 Hb_034579_010 Hb_034579_010 Hb_002365_010--Hb_034579_010 Hb_169488_010--Hb_001951_280 Hb_169488_010--Hb_063511_010 Hb_001544_020 Hb_001544_020 Hb_169488_010--Hb_001544_020 Hb_169488_010--Hb_015091_010 Hb_162999_010 Hb_162999_010 Hb_126398_010--Hb_162999_010 Hb_126398_010--Hb_001981_080 Hb_135403_010 Hb_135403_010 Hb_126398_010--Hb_135403_010 Hb_000048_090 Hb_000048_090 Hb_126398_010--Hb_000048_090 Hb_002153_010 Hb_002153_010 Hb_126398_010--Hb_002153_010 Hb_145827_010 Hb_145827_010 Hb_001981_080--Hb_145827_010 Hb_001981_080--Hb_001544_020 Hb_036285_010 Hb_036285_010 Hb_001981_080--Hb_036285_010 Hb_001981_080--Hb_003702_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 4.1713 65.5372
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.58484 8.10744 1.25765 0 0

CAGE analysis