Hb_000003_710

Information

Type -
Description -
Location Contig3: 550531-555723
Sequence    

Annotation

kegg
ID rcu:RCOM_1489440
description hypothetical protein
nr
ID XP_012069082.1
description PREDICTED: RNA polymerase II-associated factor 1 homolog [Jatropha curcas]
swissprot
ID F4HQA1
description Protein PAF1 homolog OS=Arabidopsis thaliana GN=VIP2 PE=1 SV=1
trembl
ID A0A067L8N5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24859 PE=4 SV=1
Gene Ontology
ID GO:0009640
description rna polymerase ii-associated factor 1 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31453: 550038-550783 , PASA_asmbl_31454: 550943-555621 , PASA_asmbl_31455: 553790-553996
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000003_710 0.0 - - PREDICTED: RNA polymerase II-associated factor 1 homolog [Jatropha curcas]
2 Hb_000152_110 0.0797687993 - - PREDICTED: protoheme IX farnesyltransferase, mitochondrial isoform X1 [Jatropha curcas]
3 Hb_002769_030 0.0927157317 - - PREDICTED: MATE efflux family protein 4, chloroplastic-like [Jatropha curcas]
4 Hb_002241_010 0.0949938147 - - PREDICTED: salicylic acid-binding protein 2-like [Jatropha curcas]
5 Hb_000094_070 0.0977719478 - - PREDICTED: 5'-nucleotidase domain-containing protein 4 isoform X2 [Jatropha curcas]
6 Hb_000948_150 0.10149467 - - PREDICTED: heme-binding-like protein At3g10130, chloroplastic [Jatropha curcas]
7 Hb_002006_030 0.1027721289 - - PREDICTED: zinc finger BED domain-containing protein DAYSLEEPER [Jatropha curcas]
8 Hb_005116_050 0.1038831459 - - PREDICTED: pentatricopeptide repeat-containing protein At4g02820, mitochondrial isoform X1 [Jatropha curcas]
9 Hb_000866_260 0.1043973304 - - PREDICTED: F-box/kelch-repeat protein SKIP4 isoform X1 [Jatropha curcas]
10 Hb_000340_100 0.1090449478 - - PREDICTED: protein PALE CRESS, chloroplastic [Jatropha curcas]
11 Hb_000059_380 0.1093291826 - - PREDICTED: uncharacterized protein LOC105648668 [Jatropha curcas]
12 Hb_070256_010 0.1104211834 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105630457 [Jatropha curcas]
13 Hb_003363_070 0.1106342469 - - -
14 Hb_000039_150 0.1113039368 - - PREDICTED: lysine-specific demethylase JMJ25 isoform X1 [Jatropha curcas]
15 Hb_008959_010 0.1113978204 - - conserved hypothetical protein [Ricinus communis]
16 Hb_005588_080 0.1116474986 - - PREDICTED: uncharacterized protein LOC105633661 [Jatropha curcas]
17 Hb_000917_060 0.1125584331 - - PREDICTED: GTP-binding protein At2g22870 [Jatropha curcas]
18 Hb_000190_030 0.1128221393 - - PREDICTED: BEACH domain-containing protein lvsA-like [Pyrus x bretschneideri]
19 Hb_001287_040 0.1140456434 - - PREDICTED: kinesin-like protein NACK1 [Jatropha curcas]
20 Hb_010068_080 0.1145365239 - - PREDICTED: RNA-binding protein rsd1-like [Jatropha curcas]

Gene co-expression network

sample Hb_000003_710 Hb_000003_710 Hb_000152_110 Hb_000152_110 Hb_000003_710--Hb_000152_110 Hb_002769_030 Hb_002769_030 Hb_000003_710--Hb_002769_030 Hb_002241_010 Hb_002241_010 Hb_000003_710--Hb_002241_010 Hb_000094_070 Hb_000094_070 Hb_000003_710--Hb_000094_070 Hb_000948_150 Hb_000948_150 Hb_000003_710--Hb_000948_150 Hb_002006_030 Hb_002006_030 Hb_000003_710--Hb_002006_030 Hb_000152_110--Hb_000094_070 Hb_000152_110--Hb_000948_150 Hb_000482_040 Hb_000482_040 Hb_000152_110--Hb_000482_040 Hb_000152_110--Hb_002769_030 Hb_027472_070 Hb_027472_070 Hb_000152_110--Hb_027472_070 Hb_000039_150 Hb_000039_150 Hb_002769_030--Hb_000039_150 Hb_008959_010 Hb_008959_010 Hb_002769_030--Hb_008959_010 Hb_003153_010 Hb_003153_010 Hb_002769_030--Hb_003153_010 Hb_001163_060 Hb_001163_060 Hb_002769_030--Hb_001163_060 Hb_001629_030 Hb_001629_030 Hb_002769_030--Hb_001629_030 Hb_004108_160 Hb_004108_160 Hb_002769_030--Hb_004108_160 Hb_000190_030 Hb_000190_030 Hb_002241_010--Hb_000190_030 Hb_002929_060 Hb_002929_060 Hb_002241_010--Hb_002929_060 Hb_001243_040 Hb_001243_040 Hb_002241_010--Hb_001243_040 Hb_114310_090 Hb_114310_090 Hb_002241_010--Hb_114310_090 Hb_000753_240 Hb_000753_240 Hb_002241_010--Hb_000753_240 Hb_004712_130 Hb_004712_130 Hb_000094_070--Hb_004712_130 Hb_003125_170 Hb_003125_170 Hb_000094_070--Hb_003125_170 Hb_000181_340 Hb_000181_340 Hb_000094_070--Hb_000181_340 Hb_001157_240 Hb_001157_240 Hb_000094_070--Hb_001157_240 Hb_000094_070--Hb_000039_150 Hb_000366_040 Hb_000366_040 Hb_000094_070--Hb_000366_040 Hb_000948_150--Hb_000181_340 Hb_000948_150--Hb_000094_070 Hb_001912_110 Hb_001912_110 Hb_000948_150--Hb_001912_110 Hb_000948_150--Hb_004108_160 Hb_032202_040 Hb_032202_040 Hb_000948_150--Hb_032202_040 Hb_009486_140 Hb_009486_140 Hb_002006_030--Hb_009486_140 Hb_002660_010 Hb_002660_010 Hb_002006_030--Hb_002660_010 Hb_002218_090 Hb_002218_090 Hb_002006_030--Hb_002218_090 Hb_000684_470 Hb_000684_470 Hb_002006_030--Hb_000684_470 Hb_001862_210 Hb_001862_210 Hb_002006_030--Hb_001862_210 Hb_070256_010 Hb_070256_010 Hb_002006_030--Hb_070256_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.9716 12.7897 19.9916 8.15454 12.6281 8.50958
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.3199 14.7778 24.609 14.2073 23.2704

CAGE analysis