Hb_000003_760

Information

Type transcription factor
Description TF Family: AUX/IAA
Location Contig3: 608226-611613
Sequence    

Annotation

kegg
ID rcu:RCOM_1488790
description Auxin-responsive protein IAA6, putative
nr
ID XP_012069076.1
description PREDICTED: auxin-responsive protein IAA26-like [Jatropha curcas]
swissprot
ID Q8LAL2
description Auxin-responsive protein IAA26 OS=Arabidopsis thaliana GN=IAA26 PE=1 SV=2
trembl
ID A0A067L8N0
description Auxin-responsive protein OS=Jatropha curcas GN=JCGZ_24854 PE=3 SV=1
Gene Ontology
ID GO:0005634
description auxin-responsive protein iaa26-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31462: 608141-608257 , PASA_asmbl_31463: 608264-611651 , PASA_asmbl_31464: 610827-611651
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000003_760 0.0 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA26-like [Jatropha curcas]
2 Hb_001787_070 0.1338431325 - - PREDICTED: E3 ubiquitin-protein ligase RBBP6-like [Camelina sativa]
3 Hb_000336_190 0.1349491394 - - PREDICTED: UPF0481 protein At3g47200-like [Gossypium raimondii]
4 Hb_111881_030 0.1352287612 - - PREDICTED: uncharacterized protein LOC105645255 [Jatropha curcas]
5 Hb_009557_050 0.1424709919 transcription factor TF Family: C2H2 zinc finger family protein [Populus trichocarpa]
6 Hb_001956_190 0.1429288538 - - PREDICTED: E3 ubiquitin-protein ligase RING1 [Jatropha curcas]
7 Hb_178658_010 0.1456973722 - - PREDICTED: uncharacterized protein LOC105641396 [Jatropha curcas]
8 Hb_008406_030 0.1483157145 transcription factor TF Family: ERF AP2/ERF super family protein [Hevea brasiliensis]
9 Hb_020967_010 0.1530456606 - - -
10 Hb_009421_050 0.1533353811 - - PREDICTED: uncharacterized protein LOC105647037 [Jatropha curcas]
11 Hb_000506_130 0.1584865061 - - DGCR14-related family protein [Populus trichocarpa]
12 Hb_004143_050 0.1586371303 - - PREDICTED: uncharacterized protein LOC105630712 [Jatropha curcas]
13 Hb_125884_010 0.1634267681 - - PREDICTED: metalloendoproteinase 1-like [Jatropha curcas]
14 Hb_019026_030 0.1656372616 - - hypothetical protein JCGZ_00744 [Jatropha curcas]
15 Hb_001791_010 0.1680716912 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g63710 [Jatropha curcas]
16 Hb_027905_010 0.1720651339 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
17 Hb_010142_040 0.172662568 - - PREDICTED: classical arabinogalactan protein 4-like [Jatropha curcas]
18 Hb_001472_140 0.1754601274 - - PREDICTED: BTB/POZ domain-containing protein At5g41330 [Jatropha curcas]
19 Hb_002311_110 0.181218597 - - conserved hypothetical protein [Ricinus communis]
20 Hb_005687_060 0.1833976171 - - PREDICTED: cinnamoyl-CoA reductase 1-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000003_760 Hb_000003_760 Hb_001787_070 Hb_001787_070 Hb_000003_760--Hb_001787_070 Hb_000336_190 Hb_000336_190 Hb_000003_760--Hb_000336_190 Hb_111881_030 Hb_111881_030 Hb_000003_760--Hb_111881_030 Hb_009557_050 Hb_009557_050 Hb_000003_760--Hb_009557_050 Hb_001956_190 Hb_001956_190 Hb_000003_760--Hb_001956_190 Hb_178658_010 Hb_178658_010 Hb_000003_760--Hb_178658_010 Hb_032920_040 Hb_032920_040 Hb_001787_070--Hb_032920_040 Hb_010142_040 Hb_010142_040 Hb_001787_070--Hb_010142_040 Hb_082225_010 Hb_082225_010 Hb_001787_070--Hb_082225_010 Hb_031530_010 Hb_031530_010 Hb_001787_070--Hb_031530_010 Hb_000836_160 Hb_000836_160 Hb_001787_070--Hb_000836_160 Hb_000336_190--Hb_178658_010 Hb_000836_210 Hb_000836_210 Hb_000336_190--Hb_000836_210 Hb_002875_070 Hb_002875_070 Hb_000336_190--Hb_002875_070 Hb_002849_110 Hb_002849_110 Hb_000336_190--Hb_002849_110 Hb_001472_140 Hb_001472_140 Hb_000336_190--Hb_001472_140 Hb_111881_030--Hb_001956_190 Hb_000003_430 Hb_000003_430 Hb_111881_030--Hb_000003_430 Hb_000506_130 Hb_000506_130 Hb_111881_030--Hb_000506_130 Hb_052113_020 Hb_052113_020 Hb_111881_030--Hb_052113_020 Hb_008725_190 Hb_008725_190 Hb_111881_030--Hb_008725_190 Hb_008406_030 Hb_008406_030 Hb_009557_050--Hb_008406_030 Hb_004241_200 Hb_004241_200 Hb_009557_050--Hb_004241_200 Hb_009557_050--Hb_001472_140 Hb_002234_130 Hb_002234_130 Hb_009557_050--Hb_002234_130 Hb_019026_030 Hb_019026_030 Hb_009557_050--Hb_019026_030 Hb_001956_190--Hb_000003_430 Hb_001956_190--Hb_000506_130 Hb_000270_770 Hb_000270_770 Hb_001956_190--Hb_000270_770 Hb_001956_190--Hb_000336_190 Hb_002311_110 Hb_002311_110 Hb_178658_010--Hb_002311_110 Hb_178658_010--Hb_000836_210 Hb_178658_010--Hb_002849_110 Hb_007382_100 Hb_007382_100 Hb_178658_010--Hb_007382_100 Hb_000087_100 Hb_000087_100 Hb_178658_010--Hb_000087_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.06342 55.3573 9.33316 42.5877 0.561797 2.33279
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.37629 6.16801 1.16723 4.16704 4.30815

CAGE analysis