Hb_000003_770

Information

Type -
Description -
Location Contig3: 613196-614002
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000003_770 0.0 - - -
2 Hb_001379_130 0.0337822287 - - PREDICTED: pre-mRNA-processing protein 40A isoform X2 [Jatropha curcas]
3 Hb_088496_010 0.1115587935 - - PREDICTED: uncharacterized protein LOC104889111 [Beta vulgaris subsp. vulgaris]
4 Hb_001257_020 0.1311180842 - - -
5 Hb_004297_030 0.1411428603 - - PREDICTED: uncharacterized protein LOC105633198 [Jatropha curcas]
6 Hb_012324_020 0.1426608038 - - -
7 Hb_094721_010 0.1438249799 - - PREDICTED: uncharacterized protein LOC104809818, partial [Tarenaya hassleriana]
8 Hb_148262_020 0.1883403621 - - -
9 Hb_005222_020 0.1952650681 - - hypothetical protein [Beta vulgaris subsp. vulgaris]
10 Hb_007761_050 0.2029246471 - - calcineurin-like protein [Hevea brasiliensis]
11 Hb_039305_010 0.2043789249 - - hypothetical protein JCGZ_18422 [Jatropha curcas]
12 Hb_008092_140 0.2151089311 - - PREDICTED: uncharacterized protein LOC103636948 [Zea mays]
13 Hb_005408_040 0.2163439958 - - -
14 Hb_000270_150 0.2183528226 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
15 Hb_000736_010 0.2238138604 - - PREDICTED: uncharacterized protein LOC105762083 [Gossypium raimondii]
16 Hb_000094_260 0.2279651315 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000067_020 0.2281413648 desease resistance Gene Name: NB-ARC PREDICTED: inactive disease resistance protein RPS4-like [Jatropha curcas]
18 Hb_145890_010 0.228434366 - - unnamed protein product [Vitis vinifera]
19 Hb_187024_070 0.239080852 - - PREDICTED: uncharacterized protein LOC105785446 [Gossypium raimondii]
20 Hb_000738_010 0.2413353545 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]

Gene co-expression network

sample Hb_000003_770 Hb_000003_770 Hb_001379_130 Hb_001379_130 Hb_000003_770--Hb_001379_130 Hb_088496_010 Hb_088496_010 Hb_000003_770--Hb_088496_010 Hb_001257_020 Hb_001257_020 Hb_000003_770--Hb_001257_020 Hb_004297_030 Hb_004297_030 Hb_000003_770--Hb_004297_030 Hb_012324_020 Hb_012324_020 Hb_000003_770--Hb_012324_020 Hb_094721_010 Hb_094721_010 Hb_000003_770--Hb_094721_010 Hb_001379_130--Hb_001257_020 Hb_001379_130--Hb_088496_010 Hb_001379_130--Hb_012324_020 Hb_001379_130--Hb_094721_010 Hb_001379_130--Hb_004297_030 Hb_088496_010--Hb_004297_030 Hb_088496_010--Hb_094721_010 Hb_088496_010--Hb_012324_020 Hb_088496_010--Hb_001257_020 Hb_007761_050 Hb_007761_050 Hb_001257_020--Hb_007761_050 Hb_148262_020 Hb_148262_020 Hb_001257_020--Hb_148262_020 Hb_001257_020--Hb_004297_030 Hb_015091_010 Hb_015091_010 Hb_004297_030--Hb_015091_010 Hb_004297_030--Hb_094721_010 Hb_004297_030--Hb_012324_020 Hb_000348_040 Hb_000348_040 Hb_004297_030--Hb_000348_040 Hb_012324_020--Hb_094721_010 Hb_005408_040 Hb_005408_040 Hb_012324_020--Hb_005408_040 Hb_094721_010--Hb_005408_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0.213687
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.824759 0.648312 0 0 0

CAGE analysis