Hb_000003_780

Information

Type -
Description -
Location Contig3: 622324-627854
Sequence    

Annotation

kegg
ID rcu:RCOM_1488780
description hexokinase, putative (EC:2.7.1.1)
nr
ID AHY84734.1
description hexokinase [Manihot esculenta]
swissprot
ID Q9SEK2
description Hexokinase-1 OS=Nicotiana tabacum GN=HXK1 PE=2 SV=1
trembl
ID A0A023ZYN3
description Hexokinase OS=Manihot esculenta GN=HXK5 PE=2 SV=1
Gene Ontology
ID GO:0009707
description hexokinase 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31466: 622223-627704 , PASA_asmbl_31468: 628739-634093 , PASA_asmbl_31469: 628739-634093
cDNA
(Sanger)
(ID:Location)		 016_P02.ab1: 628848-629028 , 023_I15.ab1: 625776-627704 , 032_D15.ab1: 625716-627704

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000003_780 0.0 - - hexokinase [Manihot esculenta]
2 Hb_002631_240 0.0791359858 - - JHL17M24.3 [Jatropha curcas]
3 Hb_005946_040 0.0814950261 - - PREDICTED: probable protein phosphatase 2C 22 isoform X2 [Jatropha curcas]
4 Hb_002874_180 0.0815245576 - - PREDICTED: protein AIG2-like isoform X1 [Jatropha curcas]
5 Hb_007002_020 0.0827594092 - - PREDICTED: uncharacterized protein LOC105642604 [Jatropha curcas]
6 Hb_001900_140 0.0840396069 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit 4, chloroplastic [Jatropha curcas]
7 Hb_001587_180 0.0849834155 - - PREDICTED: peptide methionine sulfoxide reductase B5-like [Jatropha curcas]
8 Hb_000028_520 0.0850172969 - - hypothetical protein L484_025125 [Morus notabilis]
9 Hb_001541_110 0.0885279836 - - PREDICTED: sufE-like protein 2, chloroplastic isoform X2 [Jatropha curcas]
10 Hb_005162_110 0.0887818268 - - PREDICTED: uncharacterized protein LOC105648430 [Jatropha curcas]
11 Hb_171554_010 0.0890202184 - - PREDICTED: uncharacterized protein LOC105634071 [Jatropha curcas]
12 Hb_006132_090 0.0898599868 - - PREDICTED: origin of replication complex subunit 5 isoform X1 [Jatropha curcas]
13 Hb_001935_100 0.0924596578 - - structural molecule, putative [Ricinus communis]
14 Hb_002687_120 0.0942332532 - - PREDICTED: lipoyl synthase, chloroplastic [Jatropha curcas]
15 Hb_029351_010 0.0948252128 - - PREDICTED: HD domain-containing protein 2 isoform X1 [Jatropha curcas]
16 Hb_001022_030 0.0969042337 - - PREDICTED: sorting nexin 1 [Jatropha curcas]
17 Hb_002876_220 0.0970819064 - - PREDICTED: uncharacterized protein LOC105633932 [Jatropha curcas]
18 Hb_000926_080 0.097713706 - - PREDICTED: paraspeckle component 1 [Jatropha curcas]
19 Hb_000537_100 0.0984225095 - - Coiled-coil domain-containing protein, putative [Ricinus communis]
20 Hb_003119_060 0.0992578729 - - PREDICTED: dicarboxylate transporter 2.1, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_000003_780 Hb_000003_780 Hb_002631_240 Hb_002631_240 Hb_000003_780--Hb_002631_240 Hb_005946_040 Hb_005946_040 Hb_000003_780--Hb_005946_040 Hb_002874_180 Hb_002874_180 Hb_000003_780--Hb_002874_180 Hb_007002_020 Hb_007002_020 Hb_000003_780--Hb_007002_020 Hb_001900_140 Hb_001900_140 Hb_000003_780--Hb_001900_140 Hb_001587_180 Hb_001587_180 Hb_000003_780--Hb_001587_180 Hb_006907_060 Hb_006907_060 Hb_002631_240--Hb_006907_060 Hb_011671_260 Hb_011671_260 Hb_002631_240--Hb_011671_260 Hb_073973_090 Hb_073973_090 Hb_002631_240--Hb_073973_090 Hb_001703_040 Hb_001703_040 Hb_002631_240--Hb_001703_040 Hb_000537_100 Hb_000537_100 Hb_002631_240--Hb_000537_100 Hb_002631_240--Hb_005946_040 Hb_005946_040--Hb_000537_100 Hb_005162_110 Hb_005162_110 Hb_005946_040--Hb_005162_110 Hb_002876_300 Hb_002876_300 Hb_005946_040--Hb_002876_300 Hb_029622_120 Hb_029622_120 Hb_005946_040--Hb_029622_120 Hb_007558_090 Hb_007558_090 Hb_005946_040--Hb_007558_090 Hb_001022_030 Hb_001022_030 Hb_002874_180--Hb_001022_030 Hb_077026_010 Hb_077026_010 Hb_002874_180--Hb_077026_010 Hb_000058_130 Hb_000058_130 Hb_002874_180--Hb_000058_130 Hb_000003_170 Hb_000003_170 Hb_002874_180--Hb_000003_170 Hb_000028_520 Hb_000028_520 Hb_002874_180--Hb_000028_520 Hb_001287_040 Hb_001287_040 Hb_007002_020--Hb_001287_040 Hb_006132_090 Hb_006132_090 Hb_007002_020--Hb_006132_090 Hb_007002_020--Hb_001900_140 Hb_000811_070 Hb_000811_070 Hb_007002_020--Hb_000811_070 Hb_007975_060 Hb_007975_060 Hb_007002_020--Hb_007975_060 Hb_001900_140--Hb_001587_180 Hb_001900_140--Hb_006132_090 Hb_001900_140--Hb_007558_090 Hb_003266_030 Hb_003266_030 Hb_001900_140--Hb_003266_030 Hb_007904_230 Hb_007904_230 Hb_001900_140--Hb_007904_230 Hb_001900_140--Hb_005946_040 Hb_001587_180--Hb_001287_040 Hb_001587_180--Hb_005946_040 Hb_001935_100 Hb_001935_100 Hb_001587_180--Hb_001935_100 Hb_001541_110 Hb_001541_110 Hb_001587_180--Hb_001541_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.0222 10.676 45.5182 19.9364 12.2541 13.0113
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.2273 19.0442 17.6235 9.44148 27.4427

CAGE analysis