Hb_000003_790

Information

Type -
Description -
Location Contig3: 628800-634104
Sequence    

Annotation

kegg
ID rcu:RCOM_1488570
description nucleic acid binding protein, putative (EC:2.7.7.19)
nr
ID XP_012069073.1
description PREDICTED: nuclear poly(A) polymerase 4-like [Jatropha curcas]
swissprot
ID Q8VYW1
description Nuclear poly(A) polymerase 4 OS=Arabidopsis thaliana GN=PAPS4 PE=1 SV=1
trembl
ID A0A067L0V2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24852 PE=4 SV=1
Gene Ontology
ID GO:0005634
description nucleic acid binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31468: 628739-634093 , PASA_asmbl_31469: 628739-634093
cDNA
(Sanger)
(ID:Location)		 016_P02.ab1: 628848-629028

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000003_790 0.0 - - PREDICTED: nuclear poly(A) polymerase 4-like [Jatropha curcas]
2 Hb_000134_360 0.0692872865 - - PREDICTED: protein gar2 [Jatropha curcas]
3 Hb_000317_440 0.0718336929 - - PREDICTED: zinc finger CCCH domain-containing protein 13 isoform X2 [Jatropha curcas]
4 Hb_001975_020 0.0747272407 - - PREDICTED: uncharacterized protein LOC105637186 [Jatropha curcas]
5 Hb_008528_010 0.0764318686 - - PREDICTED: uncharacterized protein LOC105628498 [Jatropha curcas]
6 Hb_002235_320 0.0768540984 - - PREDICTED: polypyrimidine tract-binding protein homolog 1 isoform X1 [Jatropha curcas]
7 Hb_002725_070 0.0769545147 - - hypothetical protein PRUPE_ppa005949mg [Prunus persica]
8 Hb_001437_100 0.0791819835 - - PREDICTED: DNA-binding protein REB1-like [Jatropha curcas]
9 Hb_000631_150 0.0799908621 - - PREDICTED: RNA polymerase-associated protein LEO1 [Jatropha curcas]
10 Hb_002883_010 0.0822198054 - - PREDICTED: putative methyltransferase NSUN6 isoform X1 [Jatropha curcas]
11 Hb_000849_100 0.083801449 - - PREDICTED: uncharacterized protein LOC105644134 [Jatropha curcas]
12 Hb_000327_310 0.0845870148 - - PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp3 [Jatropha curcas]
13 Hb_031754_010 0.0865943665 transcription factor TF Family: LIM zinc ion binding protein, putative [Ricinus communis]
14 Hb_005295_040 0.0866796357 - - PREDICTED: polyadenylate-binding protein RBP47-like [Jatropha curcas]
15 Hb_000136_150 0.0906085026 - - hypothetical protein VITISV_038366 [Vitis vinifera]
16 Hb_000300_580 0.0906275253 - - PREDICTED: importin-5-like [Jatropha curcas]
17 Hb_001486_120 0.0913812244 - - PREDICTED: importin-5-like [Jatropha curcas]
18 Hb_178592_010 0.091432414 - - PREDICTED: cyprosin-like [Jatropha curcas]
19 Hb_001504_160 0.0917890428 - - PREDICTED: nuclear pore complex protein NUP96 [Jatropha curcas]
20 Hb_001582_030 0.0919203376 - - PREDICTED: uncharacterized protein LOC105639462 [Jatropha curcas]

Gene co-expression network

sample Hb_000003_790 Hb_000003_790 Hb_000134_360 Hb_000134_360 Hb_000003_790--Hb_000134_360 Hb_000317_440 Hb_000317_440 Hb_000003_790--Hb_000317_440 Hb_001975_020 Hb_001975_020 Hb_000003_790--Hb_001975_020 Hb_008528_010 Hb_008528_010 Hb_000003_790--Hb_008528_010 Hb_002235_320 Hb_002235_320 Hb_000003_790--Hb_002235_320 Hb_002725_070 Hb_002725_070 Hb_000003_790--Hb_002725_070 Hb_000631_150 Hb_000631_150 Hb_000134_360--Hb_000631_150 Hb_001486_120 Hb_001486_120 Hb_000134_360--Hb_001486_120 Hb_000134_360--Hb_008528_010 Hb_005000_270 Hb_005000_270 Hb_000134_360--Hb_005000_270 Hb_000849_100 Hb_000849_100 Hb_000134_360--Hb_000849_100 Hb_000317_440--Hb_000631_150 Hb_001437_100 Hb_001437_100 Hb_000317_440--Hb_001437_100 Hb_000136_150 Hb_000136_150 Hb_000317_440--Hb_000136_150 Hb_002883_010 Hb_002883_010 Hb_000317_440--Hb_002883_010 Hb_016657_020 Hb_016657_020 Hb_000317_440--Hb_016657_020 Hb_153547_010 Hb_153547_010 Hb_000317_440--Hb_153547_010 Hb_000327_310 Hb_000327_310 Hb_001975_020--Hb_000327_310 Hb_046615_020 Hb_046615_020 Hb_001975_020--Hb_046615_020 Hb_031754_010 Hb_031754_010 Hb_001975_020--Hb_031754_010 Hb_005295_040 Hb_005295_040 Hb_001975_020--Hb_005295_040 Hb_000116_280 Hb_000116_280 Hb_001975_020--Hb_000116_280 Hb_003018_160 Hb_003018_160 Hb_001975_020--Hb_003018_160 Hb_008528_010--Hb_001486_120 Hb_001582_030 Hb_001582_030 Hb_008528_010--Hb_001582_030 Hb_022288_010 Hb_022288_010 Hb_008528_010--Hb_022288_010 Hb_012016_020 Hb_012016_020 Hb_008528_010--Hb_012016_020 Hb_004225_130 Hb_004225_130 Hb_002235_320--Hb_004225_130 Hb_002235_320--Hb_002883_010 Hb_000239_070 Hb_000239_070 Hb_002235_320--Hb_000239_070 Hb_006002_030 Hb_006002_030 Hb_002235_320--Hb_006002_030 Hb_007416_310 Hb_007416_310 Hb_002235_320--Hb_007416_310 Hb_001019_170 Hb_001019_170 Hb_002235_320--Hb_001019_170 Hb_002725_070--Hb_005295_040 Hb_042083_070 Hb_042083_070 Hb_002725_070--Hb_042083_070 Hb_000814_090 Hb_000814_090 Hb_002725_070--Hb_000814_090 Hb_002820_040 Hb_002820_040 Hb_002725_070--Hb_002820_040 Hb_000078_100 Hb_000078_100 Hb_002725_070--Hb_000078_100 Hb_117950_020 Hb_117950_020 Hb_002725_070--Hb_117950_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
125.852 76.3906 27.104 30.5531 205.076 208.479
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
91.4256 32.4092 68.686 44.0283 36.6243

CAGE analysis