Hb_000003_840

Information

Type -
Description -
Location Contig3: 726245-732431
Sequence    

Annotation

kegg
ID pop:POPTR_0017s11030g
description POPTRDRAFT_258774; ABC transporter family protein
nr
ID ADZ48235.1
description multidrug/pheromone exporter protein [Hevea brasiliensis]
swissprot
ID Q9LHD1
description ABC transporter B family member 15 OS=Arabidopsis thaliana GN=ABCB15 PE=3 SV=1
trembl
ID F2YGT1
description Multidrug/pheromone exporter protein OS=Hevea brasiliensis PE=2 SV=1
Gene Ontology
ID GO:0016021
description abc transporter b family member 15-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31470: 726475-728632 , PASA_asmbl_31471: 728709-728943 , PASA_asmbl_31472: 729087-730522
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000003_840 0.0 - - multidrug/pheromone exporter protein [Hevea brasiliensis]
2 Hb_002936_050 0.0953729794 transcription factor TF Family: ARR-B PREDICTED: two-component response regulator ARR18 isoform X2 [Jatropha curcas]
3 Hb_042729_010 0.1265346165 - - -
4 Hb_002685_090 0.1306992645 transcription factor TF Family: C2C2-Dof hypothetical protein POPTR_0004s04590g [Populus trichocarpa]
5 Hb_143629_090 0.1314700049 - - PREDICTED: uncharacterized protein LOC105647358 [Jatropha curcas]
6 Hb_080477_050 0.1339613015 - - hypothetical protein M569_16374 [Genlisea aurea]
7 Hb_012725_110 0.135120463 - - hypothetical protein JCGZ_09397 [Jatropha curcas]
8 Hb_000419_040 0.1369695229 - - chorismate synthase [Hevea brasiliensis]
9 Hb_001278_050 0.1427482113 - - PREDICTED: uncharacterized protein LOC105636924 [Jatropha curcas]
10 Hb_012366_020 0.1427497659 - - unnamed protein product [Vitis vinifera]
11 Hb_009812_020 0.1429488113 - - -
12 Hb_009265_060 0.1441851474 - - PREDICTED: pyruvate kinase, cytosolic isozyme [Jatropha curcas]
13 Hb_002897_060 0.1462598008 - - PREDICTED: uncharacterized protein LOC105649233 [Jatropha curcas]
14 Hb_001437_240 0.1472799872 - - -
15 Hb_003943_030 0.147364803 - - PREDICTED: pentatricopeptide repeat-containing protein At1g32415, mitochondrial [Jatropha curcas]
16 Hb_000749_250 0.1534784744 - - PREDICTED: lanC-like protein GCR2 [Jatropha curcas]
17 Hb_004048_050 0.1540187275 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570-like [Citrus sinensis]
18 Hb_012573_030 0.1549994509 - - conserved hypothetical protein [Ricinus communis]
19 Hb_004206_030 0.1564179169 - - PREDICTED: protein indeterminate-domain 2-like [Jatropha curcas]
20 Hb_002392_040 0.1571044922 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000003_840 Hb_000003_840 Hb_002936_050 Hb_002936_050 Hb_000003_840--Hb_002936_050 Hb_042729_010 Hb_042729_010 Hb_000003_840--Hb_042729_010 Hb_002685_090 Hb_002685_090 Hb_000003_840--Hb_002685_090 Hb_143629_090 Hb_143629_090 Hb_000003_840--Hb_143629_090 Hb_080477_050 Hb_080477_050 Hb_000003_840--Hb_080477_050 Hb_012725_110 Hb_012725_110 Hb_000003_840--Hb_012725_110 Hb_002936_050--Hb_042729_010 Hb_000419_040 Hb_000419_040 Hb_002936_050--Hb_000419_040 Hb_012522_030 Hb_012522_030 Hb_002936_050--Hb_012522_030 Hb_001278_050 Hb_001278_050 Hb_002936_050--Hb_001278_050 Hb_002897_060 Hb_002897_060 Hb_002936_050--Hb_002897_060 Hb_004206_030 Hb_004206_030 Hb_042729_010--Hb_004206_030 Hb_000934_030 Hb_000934_030 Hb_042729_010--Hb_000934_030 Hb_042729_010--Hb_012725_110 Hb_042729_010--Hb_000419_040 Hb_000270_410 Hb_000270_410 Hb_002685_090--Hb_000270_410 Hb_000041_070 Hb_000041_070 Hb_002685_090--Hb_000041_070 Hb_015934_020 Hb_015934_020 Hb_002685_090--Hb_015934_020 Hb_002685_090--Hb_012725_110 Hb_002387_060 Hb_002387_060 Hb_002685_090--Hb_002387_060 Hb_002685_090--Hb_002936_050 Hb_000249_130 Hb_000249_130 Hb_143629_090--Hb_000249_130 Hb_004800_160 Hb_004800_160 Hb_143629_090--Hb_004800_160 Hb_152439_020 Hb_152439_020 Hb_143629_090--Hb_152439_020 Hb_001437_240 Hb_001437_240 Hb_143629_090--Hb_001437_240 Hb_024952_010 Hb_024952_010 Hb_143629_090--Hb_024952_010 Hb_003943_030 Hb_003943_030 Hb_143629_090--Hb_003943_030 Hb_080477_050--Hb_000419_040 Hb_080477_050--Hb_002936_050 Hb_080477_050--Hb_002897_060 Hb_012573_030 Hb_012573_030 Hb_080477_050--Hb_012573_030 Hb_054865_130 Hb_054865_130 Hb_080477_050--Hb_054865_130 Hb_012725_110--Hb_004206_030 Hb_012725_110--Hb_002387_060 Hb_012725_110--Hb_000041_070 Hb_000836_500 Hb_000836_500 Hb_012725_110--Hb_000836_500 Hb_002291_030 Hb_002291_030 Hb_012725_110--Hb_002291_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
55.6259 16.8129 0.956876 4.62576 27.922 27.6437
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
104.282 55.081 133.614 11.1521 0.65166

CAGE analysis