Hb_000004_010

Information

Type -
Description -
Location Contig4: 7060-10116
Sequence    

Annotation

kegg
ID oas:101120716
description niemann-Pick C1 protein-like
nr
ID KGN46670.1
description hypothetical protein Csa_6G120400 [Cucumis sativus]
swissprot
ID Q09614
description Protein patched homolog 1 OS=Caenorhabditis elegans GN=ptc-1 PE=1 SV=2
trembl
ID M1AM79
description Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400009984 PE=4 SV=1
Gene Ontology
ID GO:0016020
description niemann-pick c1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39804: 6913-61088
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000004_010 0.0 - - hypothetical protein Csa_6G120400 [Cucumis sativus]
2 Hb_000720_080 0.1334463851 - - PREDICTED: bifunctional UDP-glucose 4-epimerase and UDP-xylose 4-epimerase 1 [Jatropha curcas]
3 Hb_001747_030 0.1344589873 - - hypothetical protein F383_08210 [Gossypium arboreum]
4 Hb_000016_060 0.137805508 - - mads box protein, putative [Ricinus communis]
5 Hb_007390_020 0.1432837368 - - PREDICTED: protein FMP32, mitochondrial-like [Populus euphratica]
6 Hb_005527_020 0.1453463579 - - PREDICTED: uncharacterized protein LOC105643027 [Jatropha curcas]
7 Hb_003669_010 0.1462431785 - - PREDICTED: psbP domain-containing protein 5, chloroplastic [Populus euphratica]
8 Hb_000331_370 0.1463100484 - - Glyceraldehyde-3-phosphate dehydrogenase-2C cytosolic [Gossypium arboreum]
9 Hb_002960_130 0.147587418 - - hypothetical protein B456_008G036100 [Gossypium raimondii]
10 Hb_000107_080 0.1522299597 - - PREDICTED: uncharacterized protein LOC105641009 [Jatropha curcas]
11 Hb_019181_030 0.1537378492 - - PREDICTED: LOW QUALITY PROTEIN: conserved oligomeric Golgi complex subunit 6-like [Pyrus x bretschneideri]
12 Hb_000053_030 0.1551897361 - - hypothetical protein CISIN_1g0010393mg, partial [Citrus sinensis]
13 Hb_002660_110 0.1552942021 - - PREDICTED: serine/threonine-protein kinase-like protein CCR1 isoform X1 [Jatropha curcas]
14 Hb_003929_270 0.1560295955 - - S-adenosylmethionine-dependent methyltransferase, putative [Ricinus communis]
15 Hb_000086_410 0.1573092196 - - hypothetical protein CISIN_1g0263261mg [Citrus sinensis]
16 Hb_012796_020 0.1579640498 - - PREDICTED: ADP-ribosylation factor 1 [Prunus mume]
17 Hb_000622_350 0.1582953151 - - PREDICTED: protein ABIL1 [Jatropha curcas]
18 Hb_004466_060 0.1589653169 - - hypothetical protein POPTR_0009s12110g [Populus trichocarpa]
19 Hb_009661_030 0.1605578497 - - PREDICTED: SPX and EXS domain-containing protein 1-like [Jatropha curcas]
20 Hb_000521_160 0.1611925372 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000004_010 Hb_000004_010 Hb_000720_080 Hb_000720_080 Hb_000004_010--Hb_000720_080 Hb_001747_030 Hb_001747_030 Hb_000004_010--Hb_001747_030 Hb_000016_060 Hb_000016_060 Hb_000004_010--Hb_000016_060 Hb_007390_020 Hb_007390_020 Hb_000004_010--Hb_007390_020 Hb_005527_020 Hb_005527_020 Hb_000004_010--Hb_005527_020 Hb_003669_010 Hb_003669_010 Hb_000004_010--Hb_003669_010 Hb_000622_350 Hb_000622_350 Hb_000720_080--Hb_000622_350 Hb_000002_480 Hb_000002_480 Hb_000720_080--Hb_000002_480 Hb_000331_370 Hb_000331_370 Hb_000720_080--Hb_000331_370 Hb_000077_290 Hb_000077_290 Hb_000720_080--Hb_000077_290 Hb_004126_040 Hb_004126_040 Hb_000720_080--Hb_004126_040 Hb_002133_020 Hb_002133_020 Hb_001747_030--Hb_002133_020 Hb_000125_010 Hb_000125_010 Hb_001747_030--Hb_000125_010 Hb_000635_070 Hb_000635_070 Hb_001747_030--Hb_000635_070 Hb_072922_010 Hb_072922_010 Hb_001747_030--Hb_072922_010 Hb_000111_030 Hb_000111_030 Hb_001747_030--Hb_000111_030 Hb_002960_130 Hb_002960_130 Hb_001747_030--Hb_002960_130 Hb_001969_020 Hb_001969_020 Hb_000016_060--Hb_001969_020 Hb_000023_290 Hb_000023_290 Hb_000016_060--Hb_000023_290 Hb_148130_020 Hb_148130_020 Hb_000016_060--Hb_148130_020 Hb_006153_030 Hb_006153_030 Hb_000016_060--Hb_006153_030 Hb_002562_110 Hb_002562_110 Hb_000016_060--Hb_002562_110 Hb_000016_060--Hb_002960_130 Hb_019181_030 Hb_019181_030 Hb_007390_020--Hb_019181_030 Hb_000152_600 Hb_000152_600 Hb_007390_020--Hb_000152_600 Hb_005054_220 Hb_005054_220 Hb_007390_020--Hb_005054_220 Hb_000913_040 Hb_000913_040 Hb_007390_020--Hb_000913_040 Hb_004176_070 Hb_004176_070 Hb_007390_020--Hb_004176_070 Hb_010368_050 Hb_010368_050 Hb_007390_020--Hb_010368_050 Hb_000676_080 Hb_000676_080 Hb_005527_020--Hb_000676_080 Hb_001014_110 Hb_001014_110 Hb_005527_020--Hb_001014_110 Hb_004157_100 Hb_004157_100 Hb_005527_020--Hb_004157_100 Hb_001250_060 Hb_001250_060 Hb_005527_020--Hb_001250_060 Hb_000004_020 Hb_000004_020 Hb_005527_020--Hb_000004_020 Hb_054745_010 Hb_054745_010 Hb_005527_020--Hb_054745_010 Hb_045770_010 Hb_045770_010 Hb_003669_010--Hb_045770_010 Hb_003758_020 Hb_003758_020 Hb_003669_010--Hb_003758_020 Hb_008566_040 Hb_008566_040 Hb_003669_010--Hb_008566_040 Hb_002960_150 Hb_002960_150 Hb_003669_010--Hb_002960_150 Hb_003020_210 Hb_003020_210 Hb_003669_010--Hb_003020_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.5873 4.38871 10.294 52.6441 11.1792 19.5769
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.6281 14.9733 4.11009 9.83303 11.3445

CAGE analysis