Hb_000004_020

Information

Type -
Description -
Location Contig4: 18808-28065
Sequence    

Annotation

kegg
ID rcu:RCOM_0512970
description hypothetical protein
nr
ID XP_002527152.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SMD3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0512970 PE=4 SV=1
Gene Ontology
ID GO:0016021
description niemann-pick c1 protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39804: 6913-61088
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000004_020 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_012340_070 0.0750756201 - - Gamma-secretase subunit APH1-like family protein [Populus trichocarpa]
3 Hb_002226_080 0.0811269649 - - PREDICTED: uncharacterized protein LOC105641402 isoform X1 [Jatropha curcas]
4 Hb_001662_100 0.0855664309 - - PREDICTED: serine/threonine-protein kinase EDR1-like [Jatropha curcas]
5 Hb_000056_130 0.0885076958 - - Sucrose Transporter 2C [Hevea brasiliensis subsp. brasiliensis]
6 Hb_009569_040 0.0894316825 - - PREDICTED: uncharacterized protein LOC105635573 [Jatropha curcas]
7 Hb_004157_100 0.0907757456 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]
8 Hb_002928_090 0.0990612558 - - PREDICTED: metallocarboxypeptidase A-like protein TRV_02598 [Jatropha curcas]
9 Hb_000022_020 0.0994164191 - - hypothetical protein CICLE_v10020565mg [Citrus clementina]
10 Hb_109000_020 0.09946433 - - PREDICTED: uncharacterized protein LOC105633730 [Jatropha curcas]
11 Hb_005725_130 0.1004199742 - - PREDICTED: uncharacterized protein KIAA0930 homolog isoform X2 [Jatropha curcas]
12 Hb_001104_130 0.1020576173 - - C-14 sterol reductase, putative [Ricinus communis]
13 Hb_001014_110 0.1034689278 - - PREDICTED: ubiquitin thioesterase otubain-like [Jatropha curcas]
14 Hb_005015_060 0.1039461427 - - PREDICTED: developmentally-regulated G-protein 3 [Jatropha curcas]
15 Hb_001191_110 0.105399138 - - sur2 hydroxylase/desaturase, putative [Ricinus communis]
16 Hb_002150_040 0.1062999321 - - PREDICTED: CMP-sialic acid transporter 1 isoform X3 [Jatropha curcas]
17 Hb_009328_020 0.1078154153 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000787_160 0.1084848365 - - PREDICTED: GDP-mannose transporter GONST1 isoform X1 [Jatropha curcas]
19 Hb_003878_150 0.1087083184 - - PREDICTED: GPI mannosyltransferase 3 [Jatropha curcas]
20 Hb_086085_020 0.1122584466 - - Non-imprinted in Prader-Willi/Angelman syndrome region protein isoform 3 [Theobroma cacao]

Gene co-expression network

sample Hb_000004_020 Hb_000004_020 Hb_012340_070 Hb_012340_070 Hb_000004_020--Hb_012340_070 Hb_002226_080 Hb_002226_080 Hb_000004_020--Hb_002226_080 Hb_001662_100 Hb_001662_100 Hb_000004_020--Hb_001662_100 Hb_000056_130 Hb_000056_130 Hb_000004_020--Hb_000056_130 Hb_009569_040 Hb_009569_040 Hb_000004_020--Hb_009569_040 Hb_004157_100 Hb_004157_100 Hb_000004_020--Hb_004157_100 Hb_000022_020 Hb_000022_020 Hb_012340_070--Hb_000022_020 Hb_012340_070--Hb_000056_130 Hb_001677_080 Hb_001677_080 Hb_012340_070--Hb_001677_080 Hb_001862_140 Hb_001862_140 Hb_012340_070--Hb_001862_140 Hb_002391_290 Hb_002391_290 Hb_012340_070--Hb_002391_290 Hb_002226_080--Hb_000056_130 Hb_002226_080--Hb_009569_040 Hb_000058_110 Hb_000058_110 Hb_002226_080--Hb_000058_110 Hb_002928_090 Hb_002928_090 Hb_002226_080--Hb_002928_090 Hb_001946_180 Hb_001946_180 Hb_002226_080--Hb_001946_180 Hb_002414_050 Hb_002414_050 Hb_001662_100--Hb_002414_050 Hb_001662_100--Hb_009569_040 Hb_002883_030 Hb_002883_030 Hb_001662_100--Hb_002883_030 Hb_003544_160 Hb_003544_160 Hb_001662_100--Hb_003544_160 Hb_000787_160 Hb_000787_160 Hb_001662_100--Hb_000787_160 Hb_003878_150 Hb_003878_150 Hb_001662_100--Hb_003878_150 Hb_008511_020 Hb_008511_020 Hb_000056_130--Hb_008511_020 Hb_000056_130--Hb_009569_040 Hb_000056_130--Hb_002928_090 Hb_001157_230 Hb_001157_230 Hb_000056_130--Hb_001157_230 Hb_006810_030 Hb_006810_030 Hb_000056_130--Hb_006810_030 Hb_000256_150 Hb_000256_150 Hb_009569_040--Hb_000256_150 Hb_005725_130 Hb_005725_130 Hb_009569_040--Hb_005725_130 Hb_000049_020 Hb_000049_020 Hb_009569_040--Hb_000049_020 Hb_007481_010 Hb_007481_010 Hb_009569_040--Hb_007481_010 Hb_009569_040--Hb_002414_050 Hb_000107_230 Hb_000107_230 Hb_004157_100--Hb_000107_230 Hb_054745_010 Hb_054745_010 Hb_004157_100--Hb_054745_010 Hb_169631_010 Hb_169631_010 Hb_004157_100--Hb_169631_010 Hb_000676_080 Hb_000676_080 Hb_004157_100--Hb_000676_080 Hb_004157_100--Hb_000022_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.55556 2.70215 4.48788 14.0004 5.04925 9.28449
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.85315 5.26072 3.37124 7.11869 9.45207

CAGE analysis