Hb_000004_140

Information

Type -
Description -
Location Contig4: 272387-272611
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000004_140 0.0 - - -
2 Hb_010997_050 0.1370798793 transcription factor TF Family: mTERF unnamed protein product [Coffea canephora]
3 Hb_098842_010 0.1448320975 - - PREDICTED: uncharacterized protein At4g02000-like [Eucalyptus grandis]
4 Hb_004282_030 0.1737266453 - - hypothetical protein EUGRSUZ_B01857 [Eucalyptus grandis]
5 Hb_076583_010 0.1755717498 - - hypothetical protein JCGZ_17827 [Jatropha curcas]
6 Hb_128173_010 0.1915059677 - - PREDICTED: uncharacterized protein LOC104219073 [Nicotiana sylvestris]
7 Hb_007761_010 0.1915291551 - - -
8 Hb_111332_010 0.1932000634 - - Dihydroneopterin aldolase [Morus notabilis]
9 Hb_064951_010 0.1939858798 - - PREDICTED: uncharacterized protein LOC103699089, partial [Phoenix dactylifera]
10 Hb_105480_010 0.1954417399 - - -
11 Hb_000962_010 0.1958031558 - - -
12 Hb_005542_020 0.2013675412 - - lupus la ribonucleoprotein, putative [Ricinus communis]
13 Hb_003636_050 0.2054798805 - - PREDICTED: bark storage protein A-like [Populus euphratica]
14 Hb_006692_050 0.2091658407 - - Chloroplastic lipocalin [Theobroma cacao]
15 Hb_013727_010 0.21914836 - - hypothetical protein JCGZ_08656 [Jatropha curcas]
16 Hb_111834_010 0.2213012338 - - PREDICTED: zinc finger CCCH domain-containing protein 48-like [Jatropha curcas]
17 Hb_000795_010 0.2228539795 - - -
18 Hb_105484_010 0.2243101085 - - carbohydrate-binding-like fold protein, partial [Manihot esculenta]
19 Hb_086287_020 0.2247170997 - - PREDICTED: pentatricopeptide repeat-containing protein At2g03880, mitochondrial [Jatropha curcas]
20 Hb_042026_010 0.2394558119 - - RNA binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000004_140 Hb_000004_140 Hb_010997_050 Hb_010997_050 Hb_000004_140--Hb_010997_050 Hb_098842_010 Hb_098842_010 Hb_000004_140--Hb_098842_010 Hb_004282_030 Hb_004282_030 Hb_000004_140--Hb_004282_030 Hb_076583_010 Hb_076583_010 Hb_000004_140--Hb_076583_010 Hb_128173_010 Hb_128173_010 Hb_000004_140--Hb_128173_010 Hb_007761_010 Hb_007761_010 Hb_000004_140--Hb_007761_010 Hb_010997_050--Hb_098842_010 Hb_105484_010 Hb_105484_010 Hb_010997_050--Hb_105484_010 Hb_010997_050--Hb_076583_010 Hb_064951_010 Hb_064951_010 Hb_010997_050--Hb_064951_010 Hb_010997_050--Hb_004282_030 Hb_098842_010--Hb_105484_010 Hb_098842_010--Hb_004282_030 Hb_098842_010--Hb_076583_010 Hb_098842_010--Hb_064951_010 Hb_004829_020 Hb_004829_020 Hb_004282_030--Hb_004829_020 Hb_012340_040 Hb_012340_040 Hb_004282_030--Hb_012340_040 Hb_124567_010 Hb_124567_010 Hb_004282_030--Hb_124567_010 Hb_076583_010--Hb_064951_010 Hb_009268_110 Hb_009268_110 Hb_076583_010--Hb_009268_110 Hb_089491_010 Hb_089491_010 Hb_076583_010--Hb_089491_010 Hb_013727_010 Hb_013727_010 Hb_076583_010--Hb_013727_010 Hb_003529_210 Hb_003529_210 Hb_076583_010--Hb_003529_210 Hb_128173_010--Hb_007761_010 Hb_111332_010 Hb_111332_010 Hb_128173_010--Hb_111332_010 Hb_105480_010 Hb_105480_010 Hb_128173_010--Hb_105480_010 Hb_005542_020 Hb_005542_020 Hb_128173_010--Hb_005542_020 Hb_006692_050 Hb_006692_050 Hb_128173_010--Hb_006692_050 Hb_128173_010--Hb_013727_010 Hb_007761_010--Hb_111332_010 Hb_007761_010--Hb_105480_010 Hb_007761_010--Hb_005542_020 Hb_007761_010--Hb_006692_050 Hb_007761_010--Hb_013727_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.28815 4.87453 0 0 23.4457 165.035
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.338225 0

CAGE analysis