Hb_000005_040

Information

Type -
Description -
Location Contig5: 56020-56964
Sequence    

Annotation

kegg
ID pop:POPTR_0001s21970g
description POPTRDRAFT_181223; hypothetical protein
nr
ID XP_012065091.1
description PREDICTED: histone H2B.2 [Jatropha curcas]
swissprot
ID Q9SGE3
description Histone H2B.2 OS=Arabidopsis thaliana GN=At1g08170 PE=2 SV=1
trembl
ID A0A067L694
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05414 PE=4 SV=1
Gene Ontology
ID GO:0005694
description histone -like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000005_040 0.0 - - PREDICTED: histone H2B.2 [Jatropha curcas]
2 Hb_002260_190 0.0713616588 - - -
3 Hb_002022_050 0.0729110073 - - PREDICTED: O-acyltransferase WSD1-like isoform X1 [Populus euphratica]
4 Hb_002900_060 0.07740532 - - CI small heat shock protein 2 [Prunus salicina]
5 Hb_002595_100 0.1074395228 - - heat-shock protein, putative [Ricinus communis]
6 Hb_002232_200 0.1363729907 - - PREDICTED: sugar carrier protein C-like [Jatropha curcas]
7 Hb_001142_020 0.1468795171 - - -
8 Hb_005730_080 0.1513694857 - - PREDICTED: 17.6 kDa class I heat shock protein-like [Solanum lycopersicum]
9 Hb_155911_010 0.151979847 - - hypothetical protein JCGZ_26951 [Jatropha curcas]
10 Hb_000362_230 0.1626725194 - - UDP-glucosyltransferase, putative [Ricinus communis]
11 Hb_079543_010 0.1762442455 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
12 Hb_002073_070 0.1916969929 - - PREDICTED: 17.3 kDa class I heat shock protein-like [Jatropha curcas]
13 Hb_002141_010 0.2020923488 - - UDP-glucuronosyltransferase, putative [Ricinus communis]
14 Hb_000227_110 0.2128392081 - - hypothetical protein CICLE_v10010500mg, partial [Citrus clementina]
15 Hb_116436_010 0.2133242836 - - PREDICTED: uncharacterized protein LOC105766967 [Gossypium raimondii]
16 Hb_013394_090 0.2272859437 - - conserved hypothetical protein [Ricinus communis]
17 Hb_007127_010 0.2360776189 - - PREDICTED: uncharacterized protein LOC105629509 [Jatropha curcas]
18 Hb_000204_180 0.23848366 - - PREDICTED: uncharacterized protein LOC104094989 [Nicotiana tomentosiformis]
19 Hb_027751_050 0.249824609 - - hypothetical protein JCGZ_05887 [Jatropha curcas]
20 Hb_000227_420 0.251368647 - - PREDICTED: thermospermine synthase ACAULIS5-like [Jatropha curcas]

Gene co-expression network

sample Hb_000005_040 Hb_000005_040 Hb_002260_190 Hb_002260_190 Hb_000005_040--Hb_002260_190 Hb_002022_050 Hb_002022_050 Hb_000005_040--Hb_002022_050 Hb_002900_060 Hb_002900_060 Hb_000005_040--Hb_002900_060 Hb_002595_100 Hb_002595_100 Hb_000005_040--Hb_002595_100 Hb_002232_200 Hb_002232_200 Hb_000005_040--Hb_002232_200 Hb_001142_020 Hb_001142_020 Hb_000005_040--Hb_001142_020 Hb_002260_190--Hb_002022_050 Hb_002260_190--Hb_002595_100 Hb_002260_190--Hb_002900_060 Hb_002260_190--Hb_001142_020 Hb_155911_010 Hb_155911_010 Hb_002260_190--Hb_155911_010 Hb_002022_050--Hb_002595_100 Hb_002022_050--Hb_001142_020 Hb_002022_050--Hb_002900_060 Hb_002022_050--Hb_155911_010 Hb_002900_060--Hb_002595_100 Hb_002073_070 Hb_002073_070 Hb_002900_060--Hb_002073_070 Hb_002900_060--Hb_002232_200 Hb_002595_100--Hb_002073_070 Hb_005730_080 Hb_005730_080 Hb_002595_100--Hb_005730_080 Hb_002232_200--Hb_005730_080 Hb_002232_200--Hb_002022_050 Hb_002232_200--Hb_002260_190 Hb_002232_200--Hb_001142_020 Hb_001142_020--Hb_155911_010 Hb_000362_230 Hb_000362_230 Hb_001142_020--Hb_000362_230 Hb_079543_010 Hb_079543_010 Hb_001142_020--Hb_079543_010 Hb_002141_010 Hb_002141_010 Hb_001142_020--Hb_002141_010 Hb_000227_110 Hb_000227_110 Hb_001142_020--Hb_000227_110 Hb_000204_180 Hb_000204_180 Hb_001142_020--Hb_000204_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.21356 0.0396068 0.0177929 0.0380056 27.107 3.68191
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis