Hb_000005_050

Information

Type -
Description -
Location Contig5: 63831-70029
Sequence    

Annotation

kegg
ID pop:POPTR_0004s22730g
description hypothetical protein
nr
ID XP_012064667.1
description PREDICTED: uncharacterized protein LOC105627993 [Jatropha curcas]
swissprot
ID P29503
description Protein neuralized OS=Drosophila melanogaster GN=neur PE=1 SV=2
trembl
ID A0A067LI90
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05416 PE=4 SV=1
Gene Ontology
ID GO:0008270
description protein neuralized

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45674: 63847-65913 , PASA_asmbl_45675: 65972-66793 , PASA_asmbl_45676: 69342-70356
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000005_050 0.0 - - PREDICTED: uncharacterized protein LOC105627993 [Jatropha curcas]
2 Hb_011021_030 0.0879179639 - - PREDICTED: uncharacterized protein LOC105644390 [Jatropha curcas]
3 Hb_019613_020 0.0963692308 - - phospholipase C, putative [Ricinus communis]
4 Hb_176022_020 0.0978603511 - - cytochrome P450, putative [Ricinus communis]
5 Hb_000984_180 0.1017484073 - - PREDICTED: probable inactive poly [ADP-ribose] polymerase SRO3 isoform X1 [Jatropha curcas]
6 Hb_003404_030 0.1076553545 - - PREDICTED: monogalactosyldiacylglycerol synthase 2, chloroplastic-like isoform X1 [Jatropha curcas]
7 Hb_011316_030 0.1078813019 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 7 isoform X1 [Jatropha curcas]
8 Hb_002506_010 0.1104149428 - - choline transporter-related family protein [Populus trichocarpa]
9 Hb_003777_220 0.1147466979 transcription factor TF Family: SET PREDICTED: protein SET DOMAIN GROUP 41 isoform X1 [Jatropha curcas]
10 Hb_001416_040 0.1156338297 - - acid phosphatase, putative [Ricinus communis]
11 Hb_000057_060 0.1181254565 - - PREDICTED: uncharacterized protein LOC105634990 isoform X4 [Jatropha curcas]
12 Hb_004126_010 0.1185914047 - - PREDICTED: serine/threonine-protein kinase HT1 [Jatropha curcas]
13 Hb_040996_010 0.1190484531 - - PREDICTED: LOW QUALITY PROTEIN: helicase SEN1-like [Jatropha curcas]
14 Hb_035524_030 0.1194541934 - - conserved hypothetical protein [Ricinus communis]
15 Hb_002477_260 0.1196307398 - - PREDICTED: protein phosphatase 2C 16 [Jatropha curcas]
16 Hb_012654_020 0.1204704139 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000491_080 0.1224727669 - - PREDICTED: F-box protein SKIP31 [Jatropha curcas]
18 Hb_127979_010 0.1226699689 - - PREDICTED: uncharacterized protein LOC105629383 [Jatropha curcas]
19 Hb_000161_030 0.124089337 transcription factor TF Family: TCP PREDICTED: transcription factor TCP8 [Jatropha curcas]
20 Hb_012055_020 0.1246840409 - - PREDICTED: metal transporter Nramp3 [Jatropha curcas]

Gene co-expression network

sample Hb_000005_050 Hb_000005_050 Hb_011021_030 Hb_011021_030 Hb_000005_050--Hb_011021_030 Hb_019613_020 Hb_019613_020 Hb_000005_050--Hb_019613_020 Hb_176022_020 Hb_176022_020 Hb_000005_050--Hb_176022_020 Hb_000984_180 Hb_000984_180 Hb_000005_050--Hb_000984_180 Hb_003404_030 Hb_003404_030 Hb_000005_050--Hb_003404_030 Hb_011316_030 Hb_011316_030 Hb_000005_050--Hb_011316_030 Hb_000050_120 Hb_000050_120 Hb_011021_030--Hb_000050_120 Hb_002172_030 Hb_002172_030 Hb_011021_030--Hb_002172_030 Hb_012654_020 Hb_012654_020 Hb_011021_030--Hb_012654_020 Hb_003656_030 Hb_003656_030 Hb_011021_030--Hb_003656_030 Hb_002078_040 Hb_002078_040 Hb_011021_030--Hb_002078_040 Hb_035524_030 Hb_035524_030 Hb_019613_020--Hb_035524_030 Hb_127979_010 Hb_127979_010 Hb_019613_020--Hb_127979_010 Hb_000085_280 Hb_000085_280 Hb_019613_020--Hb_000085_280 Hb_019613_020--Hb_176022_020 Hb_019613_020--Hb_003404_030 Hb_000057_060 Hb_000057_060 Hb_019613_020--Hb_000057_060 Hb_176022_020--Hb_003404_030 Hb_012055_020 Hb_012055_020 Hb_176022_020--Hb_012055_020 Hb_000088_040 Hb_000088_040 Hb_176022_020--Hb_000088_040 Hb_040996_010 Hb_040996_010 Hb_176022_020--Hb_040996_010 Hb_000599_120 Hb_000599_120 Hb_000984_180--Hb_000599_120 Hb_000078_130 Hb_000078_130 Hb_000984_180--Hb_000078_130 Hb_000984_180--Hb_000057_060 Hb_001416_040 Hb_001416_040 Hb_000984_180--Hb_001416_040 Hb_001433_170 Hb_001433_170 Hb_000984_180--Hb_001433_170 Hb_005288_120 Hb_005288_120 Hb_000984_180--Hb_005288_120 Hb_003404_030--Hb_000057_060 Hb_002506_010 Hb_002506_010 Hb_003404_030--Hb_002506_010 Hb_003404_030--Hb_127979_010 Hb_009510_030 Hb_009510_030 Hb_003404_030--Hb_009510_030 Hb_010174_130 Hb_010174_130 Hb_003404_030--Hb_010174_130 Hb_003777_220 Hb_003777_220 Hb_011316_030--Hb_003777_220 Hb_000176_140 Hb_000176_140 Hb_011316_030--Hb_000176_140 Hb_000491_080 Hb_000491_080 Hb_011316_030--Hb_000491_080 Hb_000179_250 Hb_000179_250 Hb_011316_030--Hb_000179_250 Hb_001776_080 Hb_001776_080 Hb_011316_030--Hb_001776_080 Hb_011316_030--Hb_127979_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
205.226 24.5124 9.61784 21.2726 235.016 232.973
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
131.901 43.4409 159.75 13.7589 26.5586

CAGE analysis