Hb_000005_060

Information

Type -
Description -
Location Contig5: 80070-80675
Sequence    

Annotation

kegg
ID rcu:RCOM_0475460
description hypothetical protein
nr
ID XP_012064669.1
description PREDICTED: uncharacterized protein At1g08160 [Jatropha curcas]
swissprot
ID Q8VZ13
description Uncharacterized protein At1g08160 OS=Arabidopsis thaliana GN=At1g08160 PE=2 SV=1
trembl
ID A0A067LH80
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05417 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000005_060 0.0 - - PREDICTED: uncharacterized protein At1g08160 [Jatropha curcas]
2 Hb_001266_010 0.0616181846 - - PREDICTED: uncharacterized protein LOC101206474 [Cucumis sativus]
3 Hb_000282_020 0.0621528088 transcription factor TF Family: MYB-related conserved hypothetical protein [Ricinus communis]
4 Hb_000069_440 0.0713616954 - - PREDICTED: uncharacterized protein LOC105642861 [Jatropha curcas]
5 Hb_023582_010 0.0731664128 - - conserved hypothetical protein [Ricinus communis]
6 Hb_023827_030 0.0766657777 - - PREDICTED: thylakoid lumenal 16.5 kDa protein, chloroplastic-like [Populus euphratica]
7 Hb_004411_010 0.0769796951 - - PREDICTED: NADP-dependent alkenal double bond reductase P2-like isoform X5 [Gossypium raimondii]
8 Hb_034235_010 0.0771018447 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
9 Hb_019053_040 0.078295979 - - cytochrome P450, putative [Ricinus communis]
10 Hb_000087_040 0.0824151017 - - Autoinhibited Ca(2+)-ATPase 10 isoform 1 [Theobroma cacao]
11 Hb_003038_230 0.0828857371 - - PREDICTED: mannan endo-1,4-beta-mannosidase 7 [Jatropha curcas]
12 Hb_000313_250 0.087558064 - - PREDICTED: probable ribose-5-phosphate isomerase 2 [Jatropha curcas]
13 Hb_016297_010 0.0877843226 - - PREDICTED: uncharacterized protein LOC105638665 [Jatropha curcas]
14 Hb_011013_040 0.0881465011 transcription factor TF Family: C2C2-YABBY unknown [Populus trichocarpa]
15 Hb_005488_210 0.0888859298 - - PREDICTED: benzyl alcohol O-benzoyltransferase-like [Jatropha curcas]
16 Hb_001975_120 0.0901019361 - - chlorophyll a/b binding protein type II [Glycine max]
17 Hb_001424_010 0.0901133805 - - serine/threonine protein kinase, putative [Ricinus communis]
18 Hb_179129_010 0.0903826497 - - hypothetical protein POPTR_0018s10470g [Populus trichocarpa]
19 Hb_009476_030 0.091254324 - - fatty acid desaturase [Manihot esculenta]
20 Hb_000530_040 0.0915905808 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HDG2 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000005_060 Hb_000005_060 Hb_001266_010 Hb_001266_010 Hb_000005_060--Hb_001266_010 Hb_000282_020 Hb_000282_020 Hb_000005_060--Hb_000282_020 Hb_000069_440 Hb_000069_440 Hb_000005_060--Hb_000069_440 Hb_023582_010 Hb_023582_010 Hb_000005_060--Hb_023582_010 Hb_023827_030 Hb_023827_030 Hb_000005_060--Hb_023827_030 Hb_004411_010 Hb_004411_010 Hb_000005_060--Hb_004411_010 Hb_034235_010 Hb_034235_010 Hb_001266_010--Hb_034235_010 Hb_011013_040 Hb_011013_040 Hb_001266_010--Hb_011013_040 Hb_001975_120 Hb_001975_120 Hb_001266_010--Hb_001975_120 Hb_001266_010--Hb_000069_440 Hb_009476_030 Hb_009476_030 Hb_001266_010--Hb_009476_030 Hb_019053_040 Hb_019053_040 Hb_000282_020--Hb_019053_040 Hb_000282_020--Hb_000069_440 Hb_000282_020--Hb_004411_010 Hb_000282_020--Hb_023582_010 Hb_000282_020--Hb_023827_030 Hb_000069_440--Hb_004411_010 Hb_007853_030 Hb_007853_030 Hb_000069_440--Hb_007853_030 Hb_000069_440--Hb_023827_030 Hb_000069_220 Hb_000069_220 Hb_000069_440--Hb_000069_220 Hb_023582_010--Hb_019053_040 Hb_000722_030 Hb_000722_030 Hb_023582_010--Hb_000722_030 Hb_016297_010 Hb_016297_010 Hb_023582_010--Hb_016297_010 Hb_105148_020 Hb_105148_020 Hb_023582_010--Hb_105148_020 Hb_023827_030--Hb_016297_010 Hb_023827_030--Hb_019053_040 Hb_023827_030--Hb_023582_010 Hb_023827_030--Hb_105148_020 Hb_004411_010--Hb_000069_220 Hb_000697_030 Hb_000697_030 Hb_004411_010--Hb_000697_030 Hb_016371_010 Hb_016371_010 Hb_004411_010--Hb_016371_010 Hb_004411_010--Hb_007853_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.598783 7.07631 2.73856 0 0.0631388
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0961473 4.6986

CAGE analysis