Hb_000005_070

Information

Type transcription factor
Description TF Family: PHD
Location Contig5: 116945-124502
Sequence    

Annotation

kegg
ID rcu:RCOM_0475450
description protein binding protein, putative
nr
ID XP_002523738.1
description protein binding protein, putative [Ricinus communis]
swissprot
ID F4IXE7
description Increased DNA methylation 1 OS=Arabidopsis thaliana GN=IDM1 PE=1 SV=1
trembl
ID B9SCL9
description Protein binding protein, putative OS=Ricinus communis GN=RCOM_0475450 PE=4 SV=1
Gene Ontology
ID GO:0008270
description protein binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45681: 117775-124279
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000005_070 0.0 transcription factor TF Family: PHD protein binding protein, putative [Ricinus communis]
2 Hb_128743_010 0.0725312824 - - RNA-binding protein, putative [Ricinus communis]
3 Hb_000174_290 0.0771973625 - - PREDICTED: conserved oligomeric Golgi complex subunit 1 [Jatropha curcas]
4 Hb_004079_060 0.0950127014 - - hypothetical protein JCGZ_07228 [Jatropha curcas]
5 Hb_004108_100 0.0966510292 - - PREDICTED: mediator of RNA polymerase II transcription subunit 33B isoform X2 [Jatropha curcas]
6 Hb_006117_080 0.098490601 - - PREDICTED: transcription factor GTE4 isoform X1 [Jatropha curcas]
7 Hb_002233_100 0.099419113 - - PREDICTED: cleavage and polyadenylation specificity factor subunit 6-like [Malus domestica]
8 Hb_012490_090 0.1011072228 - - PREDICTED: myosin-17 [Jatropha curcas]
9 Hb_000046_190 0.101483774 - - PREDICTED: uncharacterized protein LOC105647118 [Jatropha curcas]
10 Hb_001322_130 0.1027236463 - - PREDICTED: putative glycerol-3-phosphate transporter 4 [Jatropha curcas]
11 Hb_019430_020 0.1034297439 - - PREDICTED: uncharacterized protein LOC105641844 isoform X1 [Jatropha curcas]
12 Hb_000260_640 0.104914175 - - PREDICTED: uncharacterized protein At1g51745 [Jatropha curcas]
13 Hb_000321_150 0.1063384723 - - PREDICTED: uncharacterized protein LOC105645596 isoform X1 [Jatropha curcas]
14 Hb_007575_080 0.1063672286 - - PREDICTED: lysine-specific histone demethylase 1 homolog 3 [Jatropha curcas]
15 Hb_006420_040 0.1079360908 transcription factor TF Family: Orphans PREDICTED: paired amphipathic helix protein Sin3-like 4 isoform X2 [Jatropha curcas]
16 Hb_002253_080 0.108587889 - - PREDICTED: phosphatidylinositol 4-kinase beta 1-like [Jatropha curcas]
17 Hb_009767_080 0.1086871164 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105631983 [Jatropha curcas]
18 Hb_009851_070 0.1092142517 - - PREDICTED: cyclin-dependent kinase E-1 [Jatropha curcas]
19 Hb_000796_030 0.1093943786 - - PREDICTED: pentatricopeptide repeat-containing protein At4g32450, mitochondrial-like [Jatropha curcas]
20 Hb_002260_050 0.1098833644 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000005_070 Hb_000005_070 Hb_128743_010 Hb_128743_010 Hb_000005_070--Hb_128743_010 Hb_000174_290 Hb_000174_290 Hb_000005_070--Hb_000174_290 Hb_004079_060 Hb_004079_060 Hb_000005_070--Hb_004079_060 Hb_004108_100 Hb_004108_100 Hb_000005_070--Hb_004108_100 Hb_006117_080 Hb_006117_080 Hb_000005_070--Hb_006117_080 Hb_002233_100 Hb_002233_100 Hb_000005_070--Hb_002233_100 Hb_128743_010--Hb_004108_100 Hb_000025_320 Hb_000025_320 Hb_128743_010--Hb_000025_320 Hb_144831_010 Hb_144831_010 Hb_128743_010--Hb_144831_010 Hb_000960_100 Hb_000960_100 Hb_128743_010--Hb_000960_100 Hb_000661_200 Hb_000661_200 Hb_128743_010--Hb_000661_200 Hb_001959_020 Hb_001959_020 Hb_128743_010--Hb_001959_020 Hb_003729_030 Hb_003729_030 Hb_000174_290--Hb_003729_030 Hb_001235_230 Hb_001235_230 Hb_000174_290--Hb_001235_230 Hb_004410_120 Hb_004410_120 Hb_000174_290--Hb_004410_120 Hb_019430_020 Hb_019430_020 Hb_000174_290--Hb_019430_020 Hb_001322_130 Hb_001322_130 Hb_000174_290--Hb_001322_130 Hb_001999_290 Hb_001999_290 Hb_004079_060--Hb_001999_290 Hb_062226_070 Hb_062226_070 Hb_004079_060--Hb_062226_070 Hb_000473_110 Hb_000473_110 Hb_004079_060--Hb_000473_110 Hb_000258_160 Hb_000258_160 Hb_004079_060--Hb_000258_160 Hb_000174_270 Hb_000174_270 Hb_004079_060--Hb_000174_270 Hb_003494_020 Hb_003494_020 Hb_004079_060--Hb_003494_020 Hb_004108_100--Hb_000960_100 Hb_004108_100--Hb_000025_320 Hb_006816_430 Hb_006816_430 Hb_004108_100--Hb_006816_430 Hb_004108_100--Hb_144831_010 Hb_002022_070 Hb_002022_070 Hb_004108_100--Hb_002022_070 Hb_001104_190 Hb_001104_190 Hb_006117_080--Hb_001104_190 Hb_000069_470 Hb_000069_470 Hb_006117_080--Hb_000069_470 Hb_009150_020 Hb_009150_020 Hb_006117_080--Hb_009150_020 Hb_000321_150 Hb_000321_150 Hb_006117_080--Hb_000321_150 Hb_024185_010 Hb_024185_010 Hb_006117_080--Hb_024185_010 Hb_000260_640 Hb_000260_640 Hb_006117_080--Hb_000260_640 Hb_000041_090 Hb_000041_090 Hb_002233_100--Hb_000041_090 Hb_000046_190 Hb_000046_190 Hb_002233_100--Hb_000046_190 Hb_002233_100--Hb_004108_100 Hb_000853_210 Hb_000853_210 Hb_002233_100--Hb_000853_210 Hb_014267_010 Hb_014267_010 Hb_002233_100--Hb_014267_010 Hb_064903_010 Hb_064903_010 Hb_002233_100--Hb_064903_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.03536 24.4402 7.5481 10.1775 22.3756 12.6179
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.39099 8.30505 14.8236 9.13465 17.6228

CAGE analysis