Hb_000005_080

Information

Type -
Description -
Location Contig5: 124945-126540
Sequence    

Annotation

kegg
ID pda:103710352
description cyclin-dependent kinases regulatory subunit 1
nr
ID XP_010907452.1
description PREDICTED: cyclin-dependent kinases regulatory subunit 1 [Elaeis guineensis]
swissprot
ID O23249
description Cyclin-dependent kinases regulatory subunit 1 OS=Arabidopsis thaliana GN=CKS1 PE=1 SV=1
trembl
ID A0A061GWB0
description Cyclin-dependent kinases regulatory subunit OS=Theobroma cacao GN=TCM_041571 PE=3 SV=1
Gene Ontology
ID GO:0005737
description cyclin-dependent kinases regulatory subunit 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45681: 117775-124279 , PASA_asmbl_45682: 124972-126457 , PASA_asmbl_45683: 124923-125208
cDNA
(Sanger)
(ID:Location)		 009_A03.ab1: 124972-126331 , 015_C11.ab1: 124925-126150 , 030_I10.ab1: 124923-126263

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000005_080 0.0 - - PREDICTED: cyclin-dependent kinases regulatory subunit 1 [Elaeis guineensis]
2 Hb_001519_050 0.0739411958 - - PREDICTED: protein RMD5 homolog A-like [Jatropha curcas]
3 Hb_000705_210 0.0827970674 - - PREDICTED: ras-related protein Rab2BV [Jatropha curcas]
4 Hb_002061_040 0.0837310276 - - PREDICTED: TMV resistance protein N-like [Pyrus x bretschneideri]
5 Hb_001247_100 0.0845707914 - - PREDICTED: pyroglutamyl-peptidase 1-like protein [Jatropha curcas]
6 Hb_000009_460 0.0854634409 - - conserved hypothetical protein [Ricinus communis]
7 Hb_004738_100 0.0860494373 - - PREDICTED: 14-3-3-like protein D-like isoform X1 [Citrus sinensis]
8 Hb_003787_010 0.0882599117 - - PREDICTED: 40S ribosomal protein S3-3-like [Phoenix dactylifera]
9 Hb_029388_030 0.0925414377 - - PREDICTED: uncharacterized protein LOC105647324 [Jatropha curcas]
10 Hb_009051_030 0.0936227701 - - PREDICTED: thioredoxin O1, mitochondrial-like [Jatropha curcas]
11 Hb_000985_060 0.0941452598 - - PREDICTED: protein transport protein SFT2-like isoform X1 [Jatropha curcas]
12 Hb_007416_320 0.0948229046 - - conserved hypothetical protein [Ricinus communis]
13 Hb_004052_050 0.0954407927 - - PREDICTED: uncharacterized protein LOC105640640 [Jatropha curcas]
14 Hb_001653_020 0.0963557459 transcription factor TF Family: C2H2 rar1, putative [Ricinus communis]
15 Hb_001159_110 0.0967923169 - - PREDICTED: uncharacterized protein At4g22758 [Jatropha curcas]
16 Hb_005431_010 0.0969707455 - - PREDICTED: glycine cleavage system H protein 2, mitochondrial [Jatropha curcas]
17 Hb_000417_040 0.0976880108 - - PREDICTED: 2-aminoethanethiol dioxygenase-like [Jatropha curcas]
18 Hb_000111_330 0.0977744009 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 [Jatropha curcas]
19 Hb_001057_040 0.0979285837 - - PREDICTED: oligosaccharyltransferase complex subunit ostc [Jatropha curcas]
20 Hb_004705_120 0.0983117378 - - ATP binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000005_080 Hb_000005_080 Hb_001519_050 Hb_001519_050 Hb_000005_080--Hb_001519_050 Hb_000705_210 Hb_000705_210 Hb_000005_080--Hb_000705_210 Hb_002061_040 Hb_002061_040 Hb_000005_080--Hb_002061_040 Hb_001247_100 Hb_001247_100 Hb_000005_080--Hb_001247_100 Hb_000009_460 Hb_000009_460 Hb_000005_080--Hb_000009_460 Hb_004738_100 Hb_004738_100 Hb_000005_080--Hb_004738_100 Hb_000635_150 Hb_000635_150 Hb_001519_050--Hb_000635_150 Hb_000373_130 Hb_000373_130 Hb_001519_050--Hb_000373_130 Hb_000125_190 Hb_000125_190 Hb_001519_050--Hb_000125_190 Hb_004705_120 Hb_004705_120 Hb_001519_050--Hb_004705_120 Hb_001519_050--Hb_002061_040 Hb_000987_070 Hb_000987_070 Hb_000705_210--Hb_000987_070 Hb_001105_070 Hb_001105_070 Hb_000705_210--Hb_001105_070 Hb_029866_090 Hb_029866_090 Hb_000705_210--Hb_029866_090 Hb_012053_070 Hb_012053_070 Hb_000705_210--Hb_012053_070 Hb_000510_130 Hb_000510_130 Hb_000705_210--Hb_000510_130 Hb_005431_010 Hb_005431_010 Hb_000705_210--Hb_005431_010 Hb_001653_020 Hb_001653_020 Hb_002061_040--Hb_001653_020 Hb_002061_040--Hb_012053_070 Hb_007416_320 Hb_007416_320 Hb_002061_040--Hb_007416_320 Hb_002061_040--Hb_000009_460 Hb_172426_040 Hb_172426_040 Hb_002061_040--Hb_172426_040 Hb_001247_100--Hb_000987_070 Hb_003502_060 Hb_003502_060 Hb_001247_100--Hb_003502_060 Hb_004052_050 Hb_004052_050 Hb_001247_100--Hb_004052_050 Hb_021068_040 Hb_021068_040 Hb_001247_100--Hb_021068_040 Hb_030736_080 Hb_030736_080 Hb_001247_100--Hb_030736_080 Hb_000058_060 Hb_000058_060 Hb_000009_460--Hb_000058_060 Hb_159809_020 Hb_159809_020 Hb_000009_460--Hb_159809_020 Hb_000574_480 Hb_000574_480 Hb_000009_460--Hb_000574_480 Hb_000009_460--Hb_007416_320 Hb_003787_010 Hb_003787_010 Hb_000009_460--Hb_003787_010 Hb_000307_090 Hb_000307_090 Hb_000009_460--Hb_000307_090 Hb_092337_010 Hb_092337_010 Hb_004738_100--Hb_092337_010 Hb_004738_100--Hb_007416_320 Hb_155159_020 Hb_155159_020 Hb_004738_100--Hb_155159_020 Hb_003092_040 Hb_003092_040 Hb_004738_100--Hb_003092_040 Hb_002631_060 Hb_002631_060 Hb_004738_100--Hb_002631_060 Hb_002105_040 Hb_002105_040 Hb_004738_100--Hb_002105_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
91.2165 84.5427 51.1834 115.334 56.6433 101.354
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
180.081 189.928 172.896 96.7337 28.3596

CAGE analysis