Hb_000005_090

Information

Type -
Description -
Location Contig5: 127729-129462
Sequence    

Annotation

kegg
ID cic:CICLE_v10029644mg
description hypothetical protein
nr
ID XP_006424434.1
description hypothetical protein CICLE_v10029644mg [Citrus clementina]
swissprot
ID -
description -
trembl
ID V4UEF1
description Uncharacterized protein OS=Citrus clementina GN=CICLE_v10029644mg PE=4 SV=1
Gene Ontology
ID GO:0016023
description hypothetical protein CICLE_v10029644mg

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45684: 127773-129362
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000005_090 0.0 - - hypothetical protein CICLE_v10029644mg [Citrus clementina]
2 Hb_000001_060 0.0704679227 - - PREDICTED: N(6)-adenine-specific DNA methyltransferase 2 [Jatropha curcas]
3 Hb_004108_070 0.072248349 - - PREDICTED: BTB/POZ and MATH domain-containing protein 2-like [Jatropha curcas]
4 Hb_002105_100 0.0728647065 - - protein with unknown function [Ricinus communis]
5 Hb_006693_020 0.0729414167 - - PREDICTED: frataxin, mitochondrial [Gossypium raimondii]
6 Hb_004127_020 0.0730544972 - - PREDICTED: probable RNA 3'-terminal phosphate cyclase-like protein isoform X1 [Populus euphratica]
7 Hb_004899_370 0.0749879223 - - hypothetical protein CICLE_v10009013mg [Citrus clementina]
8 Hb_004143_150 0.077030742 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 24-like isoform X6 [Jatropha curcas]
9 Hb_002171_060 0.077187852 - - conserved hypothetical protein [Ricinus communis]
10 Hb_008071_020 0.0773819343 - - PREDICTED: serine/threonine-protein kinase AFC1 [Jatropha curcas]
11 Hb_000390_300 0.0778246996 transcription factor TF Family: GNAT PREDICTED: histone acetyltransferase MCC1 [Jatropha curcas]
12 Hb_000701_100 0.0780265809 - - PREDICTED: ribose-phosphate pyrophosphokinase 1 [Jatropha curcas]
13 Hb_154948_040 0.0784665264 - - hypothetical protein B456_013G043800 [Gossypium raimondii]
14 Hb_001863_430 0.0787898043 - - PREDICTED: probable protein phosphatase 2C 9 [Populus euphratica]
15 Hb_000805_240 0.0788652131 - - PREDICTED: uncharacterized protein C20orf24 homolog [Jatropha curcas]
16 Hb_001476_080 0.0793167575 - - PREDICTED: eukaryotic translation initiation factor 5A-like [Jatropha curcas]
17 Hb_001341_090 0.0797857674 - - PREDICTED: adenylate kinase isoenzyme 6 homolog [Jatropha curcas]
18 Hb_026314_020 0.0813674352 - - hypothetical protein POPTR_0019s10050g [Populus trichocarpa]
19 Hb_004102_110 0.0818618097 - - Monothiol glutaredoxin-4, putative [Ricinus communis]
20 Hb_002343_060 0.0823050931 - - PREDICTED: protein cornichon homolog 4 [Jatropha curcas]

Gene co-expression network

sample Hb_000005_090 Hb_000005_090 Hb_000001_060 Hb_000001_060 Hb_000005_090--Hb_000001_060 Hb_004108_070 Hb_004108_070 Hb_000005_090--Hb_004108_070 Hb_002105_100 Hb_002105_100 Hb_000005_090--Hb_002105_100 Hb_006693_020 Hb_006693_020 Hb_000005_090--Hb_006693_020 Hb_004127_020 Hb_004127_020 Hb_000005_090--Hb_004127_020 Hb_004899_370 Hb_004899_370 Hb_000005_090--Hb_004899_370 Hb_004143_150 Hb_004143_150 Hb_000001_060--Hb_004143_150 Hb_000001_060--Hb_004899_370 Hb_001476_080 Hb_001476_080 Hb_000001_060--Hb_001476_080 Hb_003151_040 Hb_003151_040 Hb_000001_060--Hb_003151_040 Hb_001766_060 Hb_001766_060 Hb_000001_060--Hb_001766_060 Hb_005731_050 Hb_005731_050 Hb_004108_070--Hb_005731_050 Hb_004108_070--Hb_006693_020 Hb_000317_390 Hb_000317_390 Hb_004108_070--Hb_000317_390 Hb_000815_320 Hb_000815_320 Hb_004108_070--Hb_000815_320 Hb_012286_030 Hb_012286_030 Hb_004108_070--Hb_012286_030 Hb_002375_070 Hb_002375_070 Hb_004108_070--Hb_002375_070 Hb_000002_380 Hb_000002_380 Hb_002105_100--Hb_000002_380 Hb_154948_040 Hb_154948_040 Hb_002105_100--Hb_154948_040 Hb_000805_240 Hb_000805_240 Hb_002105_100--Hb_000805_240 Hb_000390_300 Hb_000390_300 Hb_002105_100--Hb_000390_300 Hb_002171_060 Hb_002171_060 Hb_002105_100--Hb_002171_060 Hb_006693_020--Hb_000390_300 Hb_000431_170 Hb_000431_170 Hb_006693_020--Hb_000431_170 Hb_000331_200 Hb_000331_200 Hb_006693_020--Hb_000331_200 Hb_000465_390 Hb_000465_390 Hb_006693_020--Hb_000465_390 Hb_006693_020--Hb_000317_390 Hb_000479_090 Hb_000479_090 Hb_004127_020--Hb_000479_090 Hb_004127_020--Hb_004143_150 Hb_000265_050 Hb_000265_050 Hb_004127_020--Hb_000265_050 Hb_004127_020--Hb_004899_370 Hb_002798_020 Hb_002798_020 Hb_004127_020--Hb_002798_020 Hb_000840_180 Hb_000840_180 Hb_004127_020--Hb_000840_180 Hb_004899_370--Hb_004143_150 Hb_023278_020 Hb_023278_020 Hb_004899_370--Hb_023278_020 Hb_004899_370--Hb_003151_040 Hb_009615_070 Hb_009615_070 Hb_004899_370--Hb_009615_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.9412 8.92805 11.9918 21.3392 11.1341 14.3746
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
20.9426 39.0999 15.0578 9.9403 10.9458

CAGE analysis