Hb_000005_110

Information

Type -
Description -
Location Contig5: 146338-146772
Sequence    

Annotation

kegg
ID mtr:MTR_4g063240
description Histone H2B
nr
ID ADR30786.1
description histone H2B1 [Hevea brasiliensis]
swissprot
ID P93354
description Histone H2B OS=Nicotiana tabacum GN=HIS2B PE=2 SV=3
trembl
ID I1SN83
description Histone H2B OS=Hevea brasiliensis GN=H2B1 PE=2 SV=1
Gene Ontology
ID GO:0000786
description core histone h2a h2b h3 h4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45686: 146157-146839
cDNA
(Sanger)
(ID:Location)		 001_N05.ab1: 146173-146839 , 010_J01.ab1: 146217-146838 , 015_L19.ab1: 146173-146839 , 038_J08.ab1: 146217-146835 , 048_G12.ab1: 146195-146835 , 052_N01.ab1: 146198-146838

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000005_110 0.0 - - histone H2B1 [Hevea brasiliensis]
2 Hb_000345_460 0.1253272529 - - PREDICTED: mitogen-activated protein kinase kinase kinase ANP1 [Jatropha curcas]
3 Hb_000364_170 0.1360237245 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase CLF [Jatropha curcas]
4 Hb_030627_070 0.1376691585 - - histone H4 [Zea mays]
5 Hb_000740_040 0.1384321172 - - PREDICTED: uncharacterized protein LOC105126082 [Populus euphratica]
6 Hb_188281_030 0.1401679994 - - PREDICTED: uridine nucleosidase 1 [Jatropha curcas]
7 Hb_001221_030 0.1413336665 - - PREDICTED: adenylate kinase 4 [Jatropha curcas]
8 Hb_083380_020 0.1448908773 - - PREDICTED: LAG1 longevity assurance homolog 2 [Jatropha curcas]
9 Hb_000684_120 0.1455211144 - - PREDICTED: uncharacterized protein LOC105642190 isoform X2 [Jatropha curcas]
10 Hb_068194_010 0.1481615559 - - hypothetical protein POPTR_0010s23740g [Populus trichocarpa]
11 Hb_000684_030 0.1528836894 - - syntaxin, putative [Ricinus communis]
12 Hb_000181_350 0.1571282974 - - PREDICTED: uncharacterized protein LOC105111090 [Populus euphratica]
13 Hb_000062_330 0.1576743071 - - unknown [Lotus japonicus]
14 Hb_154038_020 0.1588125637 - - hypothetical protein JCGZ_05648 [Jatropha curcas]
15 Hb_000008_370 0.1592854752 - - PREDICTED: uncharacterized protein LOC105628095 [Jatropha curcas]
16 Hb_001804_090 0.1597822296 - - PREDICTED: uracil phosphoribosyltransferase isoform X1 [Jatropha curcas]
17 Hb_006445_020 0.1607006252 - - hypothetical protein L484_026741 [Morus notabilis]
18 Hb_000200_300 0.1613284793 - - PREDICTED: uncharacterized protein LOC105636926 [Jatropha curcas]
19 Hb_002027_440 0.1629967553 - - conserved hypothetical protein [Ricinus communis]
20 Hb_010368_050 0.1635199708 - - PREDICTED: uncharacterized protein C1450.15 [Jatropha curcas]

Gene co-expression network

sample Hb_000005_110 Hb_000005_110 Hb_000345_460 Hb_000345_460 Hb_000005_110--Hb_000345_460 Hb_000364_170 Hb_000364_170 Hb_000005_110--Hb_000364_170 Hb_030627_070 Hb_030627_070 Hb_000005_110--Hb_030627_070 Hb_000740_040 Hb_000740_040 Hb_000005_110--Hb_000740_040 Hb_188281_030 Hb_188281_030 Hb_000005_110--Hb_188281_030 Hb_001221_030 Hb_001221_030 Hb_000005_110--Hb_001221_030 Hb_000345_460--Hb_188281_030 Hb_002027_440 Hb_002027_440 Hb_000345_460--Hb_002027_440 Hb_124677_030 Hb_124677_030 Hb_000345_460--Hb_124677_030 Hb_011242_050 Hb_011242_050 Hb_000345_460--Hb_011242_050 Hb_000345_460--Hb_001221_030 Hb_011381_040 Hb_011381_040 Hb_000364_170--Hb_011381_040 Hb_000057_110 Hb_000057_110 Hb_000364_170--Hb_000057_110 Hb_000200_300 Hb_000200_300 Hb_000364_170--Hb_000200_300 Hb_006775_120 Hb_006775_120 Hb_000364_170--Hb_006775_120 Hb_002783_220 Hb_002783_220 Hb_000364_170--Hb_002783_220 Hb_005754_040 Hb_005754_040 Hb_000364_170--Hb_005754_040 Hb_003399_100 Hb_003399_100 Hb_030627_070--Hb_003399_100 Hb_000684_120 Hb_000684_120 Hb_030627_070--Hb_000684_120 Hb_002045_190 Hb_002045_190 Hb_030627_070--Hb_002045_190 Hb_006275_060 Hb_006275_060 Hb_030627_070--Hb_006275_060 Hb_006445_020 Hb_006445_020 Hb_030627_070--Hb_006445_020 Hb_001073_080 Hb_001073_080 Hb_000740_040--Hb_001073_080 Hb_118282_010 Hb_118282_010 Hb_000740_040--Hb_118282_010 Hb_001329_090 Hb_001329_090 Hb_000740_040--Hb_001329_090 Hb_000035_240 Hb_000035_240 Hb_000740_040--Hb_000035_240 Hb_003126_130 Hb_003126_130 Hb_000740_040--Hb_003126_130 Hb_188281_030--Hb_124677_030 Hb_000331_350 Hb_000331_350 Hb_188281_030--Hb_000331_350 Hb_000282_050 Hb_000282_050 Hb_188281_030--Hb_000282_050 Hb_188281_030--Hb_002027_440 Hb_188281_030--Hb_001221_030 Hb_000684_030 Hb_000684_030 Hb_001221_030--Hb_000684_030 Hb_000174_260 Hb_000174_260 Hb_001221_030--Hb_000174_260 Hb_005276_040 Hb_005276_040 Hb_001221_030--Hb_005276_040 Hb_003605_020 Hb_003605_020 Hb_001221_030--Hb_003605_020 Hb_001221_030--Hb_000200_300 Hb_000330_090 Hb_000330_090 Hb_001221_030--Hb_000330_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
83.7042 25.4055 661.94 409.673 38.331 128.473
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
226.424 280.296 120.333 174.948 187.516

CAGE analysis