Hb_000005_160

Information

Type -
Description -
Location Contig5: 181645-182713
Sequence    

Annotation

kegg
ID rcu:RCOM_0474900
description tonoplast intrinsic protein, putative
nr
ID XP_002523724.1
description tonoplast intrinsic protein, putative [Ricinus communis]
swissprot
ID P25818
description Aquaporin TIP1-1 OS=Arabidopsis thaliana GN=TIP1-1 PE=1 SV=1
trembl
ID B9SCK5
description Tonoplast intrinsic protein, putative OS=Ricinus communis GN=RCOM_0474900 PE=3 SV=1
Gene Ontology
ID GO:0016021
description aquaporin tip1-1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45689: 181538-182711
cDNA
(Sanger)
(ID:Location)		 012_H06.ab1: 181538-182361 , 040_E01.ab1: 181538-182353 , 042_N03.ab1: 181538-182330

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000005_160 0.0 - - tonoplast intrinsic protein, putative [Ricinus communis]
2 Hb_007741_010 0.0387463776 transcription factor TF Family: C2C2-YABBY PREDICTED: axial regulator YABBY 1 [Jatropha curcas]
3 Hb_000152_200 0.0526349557 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase ERL2 isoform X1 [Jatropha curcas]
4 Hb_000544_150 0.057549002 transcription factor TF Family: HB PREDICTED: WUSCHEL-related homeobox 1 [Jatropha curcas]
5 Hb_000023_030 0.0591564843 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HDG5 [Jatropha curcas]
6 Hb_000556_050 0.0608613522 - - -
7 Hb_002045_020 0.0615288978 transcription factor TF Family: AUX/IAA auxin-induced protein aux28 [Populus trichocarpa]
8 Hb_005198_010 0.0640709021 transcription factor TF Family: C2C2-YABBY PREDICTED: axial regulator YABBY 5 [Jatropha curcas]
9 Hb_177533_010 0.0678945662 - - Serine/threonine-protein kinase-transforming protein raf, putative [Ricinus communis]
10 Hb_000329_220 0.0784388601 transcription factor TF Family: C2C2-YABBY PREDICTED: axial regulator YABBY 1 [Jatropha curcas]
11 Hb_005550_060 0.0813913317 transcription factor TF Family: MYB-related transcription factor, putative [Ricinus communis]
12 Hb_000005_390 0.0845986941 - - hypothetical protein JCGZ_04862 [Jatropha curcas]
13 Hb_004117_060 0.0851055949 - - PREDICTED: GDSL esterase/lipase At1g33811 [Jatropha curcas]
14 Hb_000190_200 0.0871183141 - - PREDICTED: uncharacterized protein LOC105649946 [Jatropha curcas]
15 Hb_008642_020 0.0892019872 - - sterol desaturase, putative [Ricinus communis]
16 Hb_007558_060 0.091399705 - - PREDICTED: uncharacterized protein LOC105644482 [Jatropha curcas]
17 Hb_004881_040 0.0919949203 - - PREDICTED: protodermal factor 1-like [Populus euphratica]
18 Hb_006909_050 0.1009194993 transcription factor TF Family: OFP hypothetical protein POPTR_0008s01840g [Populus trichocarpa]
19 Hb_002235_260 0.1011101199 transcription factor TF Family: MYB hypothetical protein POPTR_0017s12230g [Populus trichocarpa]
20 Hb_000563_110 0.1019150766 - - PREDICTED: uncharacterized protein LOC100306381 isoform X1 [Glycine max]

Gene co-expression network

sample Hb_000005_160 Hb_000005_160 Hb_007741_010 Hb_007741_010 Hb_000005_160--Hb_007741_010 Hb_000152_200 Hb_000152_200 Hb_000005_160--Hb_000152_200 Hb_000544_150 Hb_000544_150 Hb_000005_160--Hb_000544_150 Hb_000023_030 Hb_000023_030 Hb_000005_160--Hb_000023_030 Hb_000556_050 Hb_000556_050 Hb_000005_160--Hb_000556_050 Hb_002045_020 Hb_002045_020 Hb_000005_160--Hb_002045_020 Hb_000329_220 Hb_000329_220 Hb_007741_010--Hb_000329_220 Hb_007741_010--Hb_000544_150 Hb_000190_200 Hb_000190_200 Hb_007741_010--Hb_000190_200 Hb_007741_010--Hb_000152_200 Hb_004881_040 Hb_004881_040 Hb_007741_010--Hb_004881_040 Hb_177533_010 Hb_177533_010 Hb_000152_200--Hb_177533_010 Hb_000152_200--Hb_000544_150 Hb_000152_200--Hb_000556_050 Hb_005198_010 Hb_005198_010 Hb_000152_200--Hb_005198_010 Hb_005550_060 Hb_005550_060 Hb_000544_150--Hb_005550_060 Hb_000005_390 Hb_000005_390 Hb_000544_150--Hb_000005_390 Hb_008642_020 Hb_008642_020 Hb_000544_150--Hb_008642_020 Hb_002376_020 Hb_002376_020 Hb_000544_150--Hb_002376_020 Hb_000023_030--Hb_002045_020 Hb_004117_060 Hb_004117_060 Hb_000023_030--Hb_004117_060 Hb_003226_040 Hb_003226_040 Hb_000023_030--Hb_003226_040 Hb_002235_260 Hb_002235_260 Hb_000023_030--Hb_002235_260 Hb_000563_110 Hb_000563_110 Hb_000023_030--Hb_000563_110 Hb_000556_050--Hb_005198_010 Hb_019762_030 Hb_019762_030 Hb_000556_050--Hb_019762_030 Hb_000556_050--Hb_177533_010 Hb_000556_050--Hb_007741_010 Hb_002045_020--Hb_003226_040 Hb_002045_020--Hb_000563_110 Hb_002045_020--Hb_000005_390 Hb_001652_090 Hb_001652_090 Hb_002045_020--Hb_001652_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 136.595 8.72535 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 9.30676

CAGE analysis