Hb_000005_180

Information

Type -
Description -
Location Contig5: 196562-199600
Sequence    

Annotation

kegg
ID rcu:RCOM_0474730
description hypothetical protein
nr
ID XP_002523717.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9LX14
description Protein UPSTREAM OF FLC OS=Arabidopsis thaliana GN=UFC PE=2 SV=1
trembl
ID B9SCJ8
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0474730 PE=4 SV=1
Gene Ontology
ID GO:0005886
description protein upstream of flc-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45690: 196223-199600 , PASA_asmbl_45692: 196223-199600
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000005_180 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002836_120 0.0798530757 transcription factor TF Family: AP2 PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060 isoform X1 [Populus euphratica]
3 Hb_001488_030 0.1295680639 - - biotin carboxyl carrier protein [Vernicia fordii]
4 Hb_001329_090 0.1403852695 - - conserved hypothetical protein [Ricinus communis]
5 Hb_169116_010 0.1447628293 - - PREDICTED: fatty-acid-binding protein 1 [Jatropha curcas]
6 Hb_003077_150 0.1641713876 transcription factor TF Family: SWI/SNF-BAF60b brg-1 associated factor, putative [Ricinus communis]
7 Hb_000442_040 0.1656837075 - - PREDICTED: biotin carboxyl carrier protein of acetyl-CoA carboxylase, chloroplastic [Jatropha curcas]
8 Hb_003556_030 0.1681905917 - - PREDICTED: uncharacterized oxidoreductase C663.09c isoform X1 [Jatropha curcas]
9 Hb_010812_100 0.1688341642 - - phosphate transporter [Manihot esculenta]
10 Hb_000390_110 0.177164823 - - alpha-hydroxynitrile lyase family protein [Populus trichocarpa]
11 Hb_008062_040 0.1778366787 - - PREDICTED: beta carbonic anhydrase 5, chloroplastic [Jatropha curcas]
12 Hb_001541_110 0.1792704979 - - PREDICTED: sufE-like protein 2, chloroplastic isoform X2 [Jatropha curcas]
13 Hb_001946_140 0.1793942995 - - PREDICTED: heme oxygenase 1, chloroplastic-like [Jatropha curcas]
14 Hb_000035_240 0.1806439795 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000365_130 0.1826953101 - - PREDICTED: uncharacterized protein LOC105649044 [Jatropha curcas]
16 Hb_021576_080 0.1827798246 - - PREDICTED: BTB/POZ domain-containing protein NPY1 [Jatropha curcas]
17 Hb_000008_360 0.1834350114 - - hypothetical protein POPTR_0004s22050g [Populus trichocarpa]
18 Hb_000740_040 0.1860829338 - - PREDICTED: uncharacterized protein LOC105126082 [Populus euphratica]
19 Hb_000105_050 0.1866373898 - - Inositol-tetrakisphosphate 1-kinase, putative [Ricinus communis]
20 Hb_004586_430 0.1880327927 - - PREDICTED: 29 kDa ribonucleoprotein, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_000005_180 Hb_000005_180 Hb_002836_120 Hb_002836_120 Hb_000005_180--Hb_002836_120 Hb_001488_030 Hb_001488_030 Hb_000005_180--Hb_001488_030 Hb_001329_090 Hb_001329_090 Hb_000005_180--Hb_001329_090 Hb_169116_010 Hb_169116_010 Hb_000005_180--Hb_169116_010 Hb_003077_150 Hb_003077_150 Hb_000005_180--Hb_003077_150 Hb_000442_040 Hb_000442_040 Hb_000005_180--Hb_000442_040 Hb_002836_120--Hb_001488_030 Hb_000008_360 Hb_000008_360 Hb_002836_120--Hb_000008_360 Hb_000390_110 Hb_000390_110 Hb_002836_120--Hb_000390_110 Hb_002836_120--Hb_001329_090 Hb_002836_120--Hb_169116_010 Hb_000122_190 Hb_000122_190 Hb_001488_030--Hb_000122_190 Hb_000035_240 Hb_000035_240 Hb_001488_030--Hb_000035_240 Hb_001541_110 Hb_001541_110 Hb_001488_030--Hb_001541_110 Hb_000049_110 Hb_000049_110 Hb_001488_030--Hb_000049_110 Hb_001587_180 Hb_001587_180 Hb_001488_030--Hb_001587_180 Hb_003556_030 Hb_003556_030 Hb_001329_090--Hb_003556_030 Hb_001329_090--Hb_003077_150 Hb_001329_090--Hb_001541_110 Hb_001329_090--Hb_000035_240 Hb_000905_120 Hb_000905_120 Hb_001329_090--Hb_000905_120 Hb_000413_060 Hb_000413_060 Hb_001329_090--Hb_000413_060 Hb_169116_010--Hb_001488_030 Hb_019837_040 Hb_019837_040 Hb_169116_010--Hb_019837_040 Hb_000105_100 Hb_000105_100 Hb_169116_010--Hb_000105_100 Hb_169116_010--Hb_000442_040 Hb_009851_010 Hb_009851_010 Hb_169116_010--Hb_009851_010 Hb_009771_060 Hb_009771_060 Hb_003077_150--Hb_009771_060 Hb_003077_150--Hb_000905_120 Hb_003077_150--Hb_000413_060 Hb_000975_240 Hb_000975_240 Hb_003077_150--Hb_000975_240 Hb_003077_150--Hb_003556_030 Hb_160256_010 Hb_160256_010 Hb_000442_040--Hb_160256_010 Hb_005217_030 Hb_005217_030 Hb_000442_040--Hb_005217_030 Hb_021732_010 Hb_021732_010 Hb_000442_040--Hb_021732_010 Hb_000181_060 Hb_000181_060 Hb_000442_040--Hb_000181_060 Hb_000442_040--Hb_001488_030 Hb_000331_420 Hb_000331_420 Hb_000442_040--Hb_000331_420
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.8928 1.82634 32.4146 10.2343 4.08291 5.1579
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
20.7385 10.907 8.32446 0.880236 15.021

CAGE analysis