Hb_000005_220

Information

Type -
Description -
Location Contig5: 239087-242391
Sequence    

Annotation

kegg
ID mdm:103413077
description DNA ligase 1-like
nr
ID KHN38707.1
description DNA ligase 1, partial [Glycine soja]
swissprot
ID Q869E1
description DNA ligase 1 OS=Dictyostelium discoideum GN=lig1 PE=3 SV=1
trembl
ID A0A0B2S3C9
description DNA ligase (Fragment) OS=Glycine soja GN=glysoja_008256 PE=3 SV=1
Gene Ontology
ID GO:0003677
description dna ligase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45696: 212268-239347 , PASA_asmbl_45697: 239447-242077
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000005_220 0.0 - - DNA ligase 1, partial [Glycine soja]
2 Hb_183612_040 0.0570896652 - - PREDICTED: uncharacterized protein LOC105632370 [Jatropha curcas]
3 Hb_000035_110 0.0589235925 - - PREDICTED: transcription initiation factor TFIID subunit 5 [Jatropha curcas]
4 Hb_005337_090 0.0640651849 - - PREDICTED: serine/threonine-protein kinase TOUSLED-like [Jatropha curcas]
5 Hb_007441_020 0.0658703319 - - Rab6 [Hevea brasiliensis]
6 Hb_002445_100 0.066637458 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 5 isoform X2 [Jatropha curcas]
7 Hb_005779_010 0.0672703747 - - catalytic, putative [Ricinus communis]
8 Hb_063716_100 0.068623909 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 56-like isoform X2 [Jatropha curcas]
9 Hb_106552_020 0.0690170161 - - PREDICTED: serine/arginine-rich splicing factor RS2Z33 isoform X1 [Jatropha curcas]
10 Hb_000331_110 0.0711771203 - - Conserved oligomeric Golgi complex component, putative [Ricinus communis]
11 Hb_003878_110 0.0712932034 - - PREDICTED: uncharacterized protein LOC105637024 [Jatropha curcas]
12 Hb_021576_100 0.071629537 - - Enoyl-CoA hydratase, mitochondrial precursor, putative [Ricinus communis]
13 Hb_003861_050 0.072194185 - - PREDICTED: uncharacterized protein LOC105650779 [Jatropha curcas]
14 Hb_000126_010 0.0722536536 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase RFK1 isoform X1 [Jatropha curcas]
15 Hb_000345_380 0.072517537 - - PREDICTED: long chain acyl-CoA synthetase 7, peroxisomal [Jatropha curcas]
16 Hb_000020_150 0.0736965876 - - PREDICTED: uncharacterized protein LOC105636325 [Jatropha curcas]
17 Hb_000416_110 0.0741957533 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase RFK1 isoform X2 [Jatropha curcas]
18 Hb_001143_180 0.0754305455 - - PREDICTED: replication factor C subunit 5 [Jatropha curcas]
19 Hb_005289_040 0.0763399941 - - poly(A) polymerase, putative [Ricinus communis]
20 Hb_033834_030 0.0769788522 - - PREDICTED: nucleolar complex protein 2 homolog isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000005_220 Hb_000005_220 Hb_183612_040 Hb_183612_040 Hb_000005_220--Hb_183612_040 Hb_000035_110 Hb_000035_110 Hb_000005_220--Hb_000035_110 Hb_005337_090 Hb_005337_090 Hb_000005_220--Hb_005337_090 Hb_007441_020 Hb_007441_020 Hb_000005_220--Hb_007441_020 Hb_002445_100 Hb_002445_100 Hb_000005_220--Hb_002445_100 Hb_005779_010 Hb_005779_010 Hb_000005_220--Hb_005779_010 Hb_001089_110 Hb_001089_110 Hb_183612_040--Hb_001089_110 Hb_002684_040 Hb_002684_040 Hb_183612_040--Hb_002684_040 Hb_001433_070 Hb_001433_070 Hb_183612_040--Hb_001433_070 Hb_003878_110 Hb_003878_110 Hb_183612_040--Hb_003878_110 Hb_079526_030 Hb_079526_030 Hb_183612_040--Hb_079526_030 Hb_001377_310 Hb_001377_310 Hb_000035_110--Hb_001377_310 Hb_004020_040 Hb_004020_040 Hb_000035_110--Hb_004020_040 Hb_001635_160 Hb_001635_160 Hb_000035_110--Hb_001635_160 Hb_005460_050 Hb_005460_050 Hb_000035_110--Hb_005460_050 Hb_010150_020 Hb_010150_020 Hb_000035_110--Hb_010150_020 Hb_005337_090--Hb_001089_110 Hb_027428_010 Hb_027428_010 Hb_005337_090--Hb_027428_010 Hb_000308_030 Hb_000308_030 Hb_005337_090--Hb_000308_030 Hb_073973_130 Hb_073973_130 Hb_005337_090--Hb_073973_130 Hb_033834_030 Hb_033834_030 Hb_005337_090--Hb_033834_030 Hb_106552_020 Hb_106552_020 Hb_007441_020--Hb_106552_020 Hb_000866_310 Hb_000866_310 Hb_007441_020--Hb_000866_310 Hb_007441_020--Hb_000035_110 Hb_008568_020 Hb_008568_020 Hb_007441_020--Hb_008568_020 Hb_000239_060 Hb_000239_060 Hb_007441_020--Hb_000239_060 Hb_000416_110 Hb_000416_110 Hb_002445_100--Hb_000416_110 Hb_002445_100--Hb_005779_010 Hb_000339_040 Hb_000339_040 Hb_002445_100--Hb_000339_040 Hb_002445_100--Hb_106552_020 Hb_002889_010 Hb_002889_010 Hb_002445_100--Hb_002889_010 Hb_004994_010 Hb_004994_010 Hb_005779_010--Hb_004994_010 Hb_000163_220 Hb_000163_220 Hb_005779_010--Hb_000163_220 Hb_000816_250 Hb_000816_250 Hb_005779_010--Hb_000816_250 Hb_003861_050 Hb_003861_050 Hb_005779_010--Hb_003861_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.0433 8.70505 11.3737 7.60262 7.89279 11.2576
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.0332 8.02269 4.59898 8.8818 6.36375

CAGE analysis