Hb_000005_280

Information

Type -
Description -
Location Contig5: 327256-330820
Sequence    

Annotation

kegg
ID cit:102631294
description vacuolar protein sorting-associated protein 24 homolog 1-like
nr
ID XP_006488018.1
description PREDICTED: vacuolar protein sorting-associated protein 24 homolog 1-like [Citrus sinensis]
swissprot
ID Q9FFB3
description Vacuolar protein sorting-associated protein 24 homolog 1 OS=Arabidopsis thaliana GN=VPS24-1 PE=1 SV=1
trembl
ID A0A067EYV2
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g027050mg PE=4 SV=1
Gene Ontology
ID GO:0005622
description vacuolar protein sorting-associated protein 24 homolog 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45707: 327263-330780
cDNA
(Sanger)
(ID:Location)		 011_K20.ab1: 327409-330491

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000005_280 0.0 - - PREDICTED: vacuolar protein sorting-associated protein 24 homolog 1-like [Citrus sinensis]
2 Hb_003994_290 0.1069134879 - - PREDICTED: glyceraldehyde-3-phosphate dehydrogenase GAPCP2, chloroplastic [Jatropha curcas]
3 Hb_005539_220 0.111090896 - - spermidine synthase 1, putative [Ricinus communis]
4 Hb_000094_280 0.1142814697 - - PREDICTED: uncharacterized protein LOC105633771 [Jatropha curcas]
5 Hb_001818_090 0.1166520556 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000521_080 0.1179986082 - - Zinc finger BED domain-containing 4 [Gossypium arboreum]
7 Hb_002835_040 0.118006309 - - PREDICTED: quinolinate synthase, chloroplastic [Jatropha curcas]
8 Hb_005357_080 0.1208589467 - - PREDICTED: tyrosyl-DNA phosphodiesterase 1 [Jatropha curcas]
9 Hb_008246_040 0.1228797304 transcription factor TF Family: bZIP PREDICTED: transcription factor RF2a-like [Jatropha curcas]
10 Hb_000020_190 0.1245618011 - - hypothetical protein RCOM_0452240 [Ricinus communis]
11 Hb_005269_070 0.1259405904 - - PREDICTED: translation factor GUF1 homolog, organellar chromatophore [Jatropha curcas]
12 Hb_008165_060 0.1261938968 - - PREDICTED: uncharacterized protein LOC105635541 [Jatropha curcas]
13 Hb_008092_040 0.1263714646 - - PREDICTED: DNA-directed RNA polymerases II and IV subunit 5A-like [Jatropha curcas]
14 Hb_062135_030 0.1265287332 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase 1-deoxyxylulose-5-phosphate synthase, putative [Ricinus communis]
15 Hb_002998_060 0.1269742064 - - PREDICTED: vacuolar protein-sorting-associated protein 33 homolog [Jatropha curcas]
16 Hb_007075_040 0.1270959213 - - hypothetical protein CISIN_1g039518mg, partial [Citrus sinensis]
17 Hb_002542_020 0.1275146332 - - PREDICTED: uncharacterized protein LOC105634003 isoform X1 [Jatropha curcas]
18 Hb_165928_030 0.127834717 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000019_030 0.1295850886 - - PREDICTED: V-type proton ATPase subunit C [Gossypium raimondii]
20 Hb_000039_220 0.1317712752 - - PREDICTED: vesicle-associated protein 4-2-like [Gossypium raimondii]

Gene co-expression network

sample Hb_000005_280 Hb_000005_280 Hb_003994_290 Hb_003994_290 Hb_000005_280--Hb_003994_290 Hb_005539_220 Hb_005539_220 Hb_000005_280--Hb_005539_220 Hb_000094_280 Hb_000094_280 Hb_000005_280--Hb_000094_280 Hb_001818_090 Hb_001818_090 Hb_000005_280--Hb_001818_090 Hb_000521_080 Hb_000521_080 Hb_000005_280--Hb_000521_080 Hb_002835_040 Hb_002835_040 Hb_000005_280--Hb_002835_040 Hb_032808_010 Hb_032808_010 Hb_003994_290--Hb_032808_010 Hb_002016_170 Hb_002016_170 Hb_003994_290--Hb_002016_170 Hb_001711_020 Hb_001711_020 Hb_003994_290--Hb_001711_020 Hb_008511_120 Hb_008511_120 Hb_003994_290--Hb_008511_120 Hb_008013_050 Hb_008013_050 Hb_003994_290--Hb_008013_050 Hb_003994_290--Hb_000521_080 Hb_007075_040 Hb_007075_040 Hb_005539_220--Hb_007075_040 Hb_000020_190 Hb_000020_190 Hb_005539_220--Hb_000020_190 Hb_000789_060 Hb_000789_060 Hb_005539_220--Hb_000789_060 Hb_000230_200 Hb_000230_200 Hb_005539_220--Hb_000230_200 Hb_000230_560 Hb_000230_560 Hb_005539_220--Hb_000230_560 Hb_008246_040 Hb_008246_040 Hb_005539_220--Hb_008246_040 Hb_001579_030 Hb_001579_030 Hb_000094_280--Hb_001579_030 Hb_001799_030 Hb_001799_030 Hb_000094_280--Hb_001799_030 Hb_003528_010 Hb_003528_010 Hb_000094_280--Hb_003528_010 Hb_000300_500 Hb_000300_500 Hb_000094_280--Hb_000300_500 Hb_000094_280--Hb_032808_010 Hb_000025_030 Hb_000025_030 Hb_000094_280--Hb_000025_030 Hb_061090_010 Hb_061090_010 Hb_001818_090--Hb_061090_010 Hb_003032_040 Hb_003032_040 Hb_001818_090--Hb_003032_040 Hb_004109_090 Hb_004109_090 Hb_001818_090--Hb_004109_090 Hb_005663_060 Hb_005663_060 Hb_001818_090--Hb_005663_060 Hb_007441_120 Hb_007441_120 Hb_001818_090--Hb_007441_120 Hb_000579_140 Hb_000579_140 Hb_001818_090--Hb_000579_140 Hb_002141_030 Hb_002141_030 Hb_000521_080--Hb_002141_030 Hb_062135_030 Hb_062135_030 Hb_000521_080--Hb_062135_030 Hb_000212_330 Hb_000212_330 Hb_000521_080--Hb_000212_330 Hb_000094_300 Hb_000094_300 Hb_000521_080--Hb_000094_300 Hb_005054_230 Hb_005054_230 Hb_000521_080--Hb_005054_230 Hb_002728_070 Hb_002728_070 Hb_000521_080--Hb_002728_070 Hb_004414_060 Hb_004414_060 Hb_002835_040--Hb_004414_060 Hb_005269_070 Hb_005269_070 Hb_002835_040--Hb_005269_070 Hb_004410_030 Hb_004410_030 Hb_002835_040--Hb_004410_030 Hb_004619_030 Hb_004619_030 Hb_002835_040--Hb_004619_030 Hb_000915_260 Hb_000915_260 Hb_002835_040--Hb_000915_260 Hb_002271_030 Hb_002271_030 Hb_002835_040--Hb_002271_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
97.0268 21.9474 49.5507 41.1865 28.1062 61.8291
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
59.7829 51.0667 68.9707 65.8481 29.7432

CAGE analysis