Hb_000005_300

Information

Type -
Description -
Location Contig5: 337004-338025
Sequence    

Annotation

kegg
ID rcu:RCOM_0473910
description hypothetical protein
nr
ID XP_002523706.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SCI7
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0473910 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45710: 337054-337959 , PASA_asmbl_45711: 337102-337803
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000005_300 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001373_060 0.0965913335 - - PREDICTED: structure-specific endonuclease subunit slx1 [Jatropha curcas]
3 Hb_012022_140 0.1021400322 - - ADP,ATP carrier protein, putative [Ricinus communis]
4 Hb_001252_220 0.1176204751 - - PREDICTED: uncharacterized protein LOC105640647 [Jatropha curcas]
5 Hb_001979_020 0.1215029267 - - hypothetical protein OsJ_31823 [Oryza sativa Japonica Group]
6 Hb_000215_330 0.1241189177 - - PREDICTED: AP-4 complex subunit sigma [Jatropha curcas]
7 Hb_000739_140 0.1244319151 - - PREDICTED: proteasome subunit beta type-1 [Jatropha curcas]
8 Hb_003494_050 0.1292465107 - - hypothetical protein PRUPE_ppa013459mg [Prunus persica]
9 Hb_005306_070 0.1295644641 - - PREDICTED: coatomer subunit zeta-1-like [Jatropha curcas]
10 Hb_003633_060 0.1340397483 - - translationally controlled tumor protein [Hevea brasiliensis]
11 Hb_003929_150 0.1340770235 - - PREDICTED: rRNA-processing protein fcf2-like [Jatropha curcas]
12 Hb_015299_030 0.1351560528 - - PREDICTED: proteasome subunit alpha type-7 [Jatropha curcas]
13 Hb_000155_160 0.1386212644 - - hypothetical protein POPTR_0011s05880g [Populus trichocarpa]
14 Hb_004057_010 0.1393927459 - - PREDICTED: uncharacterized protein LOC105649313 [Jatropha curcas]
15 Hb_000056_070 0.1395440949 - - -
16 Hb_001431_080 0.1411132588 - - 40S ribosomal protein S11, putative [Ricinus communis]
17 Hb_019762_050 0.1414237616 transcription factor TF Family: CSD PREDICTED: glycine-rich protein 2-like [Jatropha curcas]
18 Hb_000768_130 0.1416164995 transcription factor TF Family: SWI/SNF-BAF60b PREDICTED: protein TRI1 [Jatropha curcas]
19 Hb_002811_090 0.1418291046 - - 40S ribosomal protein S24A [Hevea brasiliensis]
20 Hb_002314_010 0.1418344873 - - hypothetical protein JCGZ_15712 [Jatropha curcas]

Gene co-expression network

sample Hb_000005_300 Hb_000005_300 Hb_001373_060 Hb_001373_060 Hb_000005_300--Hb_001373_060 Hb_012022_140 Hb_012022_140 Hb_000005_300--Hb_012022_140 Hb_001252_220 Hb_001252_220 Hb_000005_300--Hb_001252_220 Hb_001979_020 Hb_001979_020 Hb_000005_300--Hb_001979_020 Hb_000215_330 Hb_000215_330 Hb_000005_300--Hb_000215_330 Hb_000739_140 Hb_000739_140 Hb_000005_300--Hb_000739_140 Hb_003633_060 Hb_003633_060 Hb_001373_060--Hb_003633_060 Hb_003494_050 Hb_003494_050 Hb_001373_060--Hb_003494_050 Hb_004057_010 Hb_004057_010 Hb_001373_060--Hb_004057_010 Hb_006198_070 Hb_006198_070 Hb_001373_060--Hb_006198_070 Hb_001431_080 Hb_001431_080 Hb_001373_060--Hb_001431_080 Hb_012022_140--Hb_001252_220 Hb_004089_020 Hb_004089_020 Hb_012022_140--Hb_004089_020 Hb_012022_140--Hb_001373_060 Hb_002232_060 Hb_002232_060 Hb_012022_140--Hb_002232_060 Hb_000676_310 Hb_000676_310 Hb_012022_140--Hb_000676_310 Hb_002260_010 Hb_002260_010 Hb_001252_220--Hb_002260_010 Hb_001252_220--Hb_004057_010 Hb_024074_010 Hb_024074_010 Hb_001252_220--Hb_024074_010 Hb_003020_150 Hb_003020_150 Hb_001252_220--Hb_003020_150 Hb_001979_020--Hb_002232_060 Hb_001979_020--Hb_003020_150 Hb_005054_260 Hb_005054_260 Hb_001979_020--Hb_005054_260 Hb_003880_030 Hb_003880_030 Hb_001979_020--Hb_003880_030 Hb_000072_200 Hb_000072_200 Hb_001979_020--Hb_000072_200 Hb_000384_120 Hb_000384_120 Hb_001979_020--Hb_000384_120 Hb_005306_070 Hb_005306_070 Hb_000215_330--Hb_005306_070 Hb_000107_300 Hb_000107_300 Hb_000215_330--Hb_000107_300 Hb_002314_010 Hb_002314_010 Hb_000215_330--Hb_002314_010 Hb_003376_190 Hb_003376_190 Hb_000215_330--Hb_003376_190 Hb_000215_330--Hb_003494_050 Hb_002303_060 Hb_002303_060 Hb_000215_330--Hb_002303_060 Hb_009075_010 Hb_009075_010 Hb_000739_140--Hb_009075_010 Hb_000739_140--Hb_005054_260 Hb_000739_140--Hb_005306_070 Hb_000768_130 Hb_000768_130 Hb_000739_140--Hb_000768_130 Hb_001053_140 Hb_001053_140 Hb_000739_140--Hb_001053_140 Hb_001410_060 Hb_001410_060 Hb_000739_140--Hb_001410_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.09681 2.26347 9.34621 9.70718 2.87623 3.01174
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.81388 29.493 6.34544 4.92474 9.52546

CAGE analysis