Hb_000005_340

Information

Type -
Description -
Location Contig5: 446361-450272
Sequence    

Annotation

kegg
ID rcu:RCOM_0485450
description DNA binding protein, putative
nr
ID XP_012072173.1
description PREDICTED: uncharacterized protein LOC105634028 isoform X1 [Jatropha curcas]
swissprot
ID P93788
description Remorin OS=Solanum tuberosum PE=1 SV=1
trembl
ID A0A067L0I9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04658 PE=4 SV=1
Gene Ontology
ID GO:0005886
description dna binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45716: 448578-449056 , PASA_asmbl_45717: 449339-449436
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000005_340 0.0 - - PREDICTED: uncharacterized protein LOC105634028 isoform X1 [Jatropha curcas]
2 Hb_019863_030 0.1431127234 - - hypothetical protein JCGZ_00393 [Jatropha curcas]
3 Hb_000024_130 0.1455072135 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000847_020 0.1464851806 - - PREDICTED: ras-related protein RABA5b [Jatropha curcas]
5 Hb_001433_160 0.1484479588 - - phosphatase 2C family protein [Populus trichocarpa]
6 Hb_000007_430 0.157045527 - - hypothetical protein POPTR_0010s14280g [Populus trichocarpa]
7 Hb_001287_060 0.1582905134 transcription factor TF Family: Orphans Salt-tolerance protein, putative [Ricinus communis]
8 Hb_152868_030 0.1625643716 - - abhydrolase domain containing, putative [Ricinus communis]
9 Hb_000320_020 0.1642517884 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 31 [Jatropha curcas]
10 Hb_029584_090 0.1660758257 - - PREDICTED: inactive protein kinase SELMODRAFT_444075 [Jatropha curcas]
11 Hb_027380_190 0.1667789765 - - PREDICTED: uncharacterized protein LOC105634028 isoform X1 [Jatropha curcas]
12 Hb_110558_010 0.1669738445 - - PREDICTED: uncharacterized protein LOC105641877 [Jatropha curcas]
13 Hb_001754_050 0.167626528 - - protein arginine n-methyltransferase, putative [Ricinus communis]
14 Hb_114684_010 0.168138952 - - PREDICTED: seed maturation protein PM36 [Jatropha curcas]
15 Hb_004883_020 0.1697332402 - - PREDICTED: uncharacterized protein LOC105647351 [Jatropha curcas]
16 Hb_143766_080 0.1702592817 - - PREDICTED: uncharacterized protein LOC105637797 isoform X1 [Jatropha curcas]
17 Hb_000009_150 0.1706629772 - - carbohydrate transporter, putative [Ricinus communis]
18 Hb_001300_170 0.1707956815 - - conserved hypothetical protein [Ricinus communis]
19 Hb_003142_060 0.1712789277 - - PREDICTED: glutamate synthase 1 [NADH], chloroplastic isoform X1 [Jatropha curcas]
20 Hb_000527_140 0.1725953029 transcription factor TF Family: GRAS Chitin-inducible gibberellin-responsive protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000005_340 Hb_000005_340 Hb_019863_030 Hb_019863_030 Hb_000005_340--Hb_019863_030 Hb_000024_130 Hb_000024_130 Hb_000005_340--Hb_000024_130 Hb_000847_020 Hb_000847_020 Hb_000005_340--Hb_000847_020 Hb_001433_160 Hb_001433_160 Hb_000005_340--Hb_001433_160 Hb_000007_430 Hb_000007_430 Hb_000005_340--Hb_000007_430 Hb_001287_060 Hb_001287_060 Hb_000005_340--Hb_001287_060 Hb_019863_030--Hb_000007_430 Hb_004586_240 Hb_004586_240 Hb_019863_030--Hb_004586_240 Hb_005504_030 Hb_005504_030 Hb_019863_030--Hb_005504_030 Hb_000139_140 Hb_000139_140 Hb_019863_030--Hb_000139_140 Hb_172706_020 Hb_172706_020 Hb_019863_030--Hb_172706_020 Hb_000731_210 Hb_000731_210 Hb_000024_130--Hb_000731_210 Hb_000760_080 Hb_000760_080 Hb_000024_130--Hb_000760_080 Hb_007575_030 Hb_007575_030 Hb_000024_130--Hb_007575_030 Hb_003106_230 Hb_003106_230 Hb_000024_130--Hb_003106_230 Hb_042202_020 Hb_042202_020 Hb_000024_130--Hb_042202_020 Hb_003142_060 Hb_003142_060 Hb_000024_130--Hb_003142_060 Hb_000527_140 Hb_000527_140 Hb_000847_020--Hb_000527_140 Hb_000847_020--Hb_000024_130 Hb_064985_010 Hb_064985_010 Hb_000847_020--Hb_064985_010 Hb_000847_020--Hb_003142_060 Hb_000527_070 Hb_000527_070 Hb_000847_020--Hb_000527_070 Hb_004656_010 Hb_004656_010 Hb_000847_020--Hb_004656_010 Hb_000009_150 Hb_000009_150 Hb_001433_160--Hb_000009_150 Hb_002284_080 Hb_002284_080 Hb_001433_160--Hb_002284_080 Hb_000002_360 Hb_000002_360 Hb_001433_160--Hb_000002_360 Hb_000009_300 Hb_000009_300 Hb_001433_160--Hb_000009_300 Hb_001433_160--Hb_000024_130 Hb_003670_030 Hb_003670_030 Hb_001433_160--Hb_003670_030 Hb_000984_260 Hb_000984_260 Hb_000007_430--Hb_000984_260 Hb_000175_470 Hb_000175_470 Hb_000007_430--Hb_000175_470 Hb_001922_060 Hb_001922_060 Hb_000007_430--Hb_001922_060 Hb_000007_430--Hb_172706_020 Hb_000832_280 Hb_000832_280 Hb_001287_060--Hb_000832_280 Hb_000216_050 Hb_000216_050 Hb_001287_060--Hb_000216_050 Hb_004324_030 Hb_004324_030 Hb_001287_060--Hb_004324_030 Hb_000181_210 Hb_000181_210 Hb_001287_060--Hb_000181_210 Hb_001456_050 Hb_001456_050 Hb_001287_060--Hb_001456_050 Hb_001287_060--Hb_001922_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.10472 2.36717 2.51978 2.27941 0.0195644 0.0358551
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.577173 0.663742 0.397631 3.28646 1.25562

CAGE analysis