Hb_000005_350

Information

Type -
Description -
Location Contig5: 460272-461795
Sequence    

Annotation

kegg
ID rcu:RCOM_0485340
description hypothetical protein
nr
ID XP_012072491.1
description PREDICTED: uncharacterized protein LOC105634263 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L1N3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04657 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45718: 460776-461637
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000005_350 0.0 - - PREDICTED: uncharacterized protein LOC105634263 [Jatropha curcas]
2 Hb_011861_020 0.0644437963 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_06096 [Jatropha curcas]
3 Hb_010334_040 0.0649904042 - - PREDICTED: uncharacterized protein LOC105108579 [Populus euphratica]
4 Hb_000589_100 0.0717563726 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
5 Hb_000684_490 0.0842286148 transcription factor TF Family: WRKY PREDICTED: WRKY transcription factor 44 [Jatropha curcas]
6 Hb_116469_010 0.0854827846 - - PREDICTED: uncharacterized protein LOC105647834 [Jatropha curcas]
7 Hb_001691_060 0.0869552097 - - lipoxygenase, putative [Ricinus communis]
8 Hb_000025_740 0.0872548572 - - PREDICTED: protein TRANSPARENT TESTA 12 isoform X1 [Jatropha curcas]
9 Hb_001660_040 0.0915414534 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Jatropha curcas]
10 Hb_000471_010 0.0929456983 - - ATP binding protein, putative [Ricinus communis]
11 Hb_028927_010 0.1104867502 - - leucine-rich repeat protein, putative [Ricinus communis]
12 Hb_004586_110 0.1130305394 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
13 Hb_150730_010 0.1139245251 - - PREDICTED: cytochrome P450 81E8-like [Jatropha curcas]
14 Hb_000288_140 0.1141752559 - - PREDICTED: putative cysteine-rich receptor-like protein kinase 35 [Jatropha curcas]
15 Hb_000723_240 0.117816104 - - phenylalanine ammonia-lyase 2 [Manihot esculenta]
16 Hb_011145_020 0.1184888813 - - PREDICTED: metalloendoproteinase 1-like [Pyrus x bretschneideri]
17 Hb_001922_010 0.1205016132 - - PREDICTED: ABC transporter G family member 8 [Jatropha curcas]
18 Hb_000057_180 0.1221748116 - - hypothetical protein POPTR_0001s18200g [Populus trichocarpa]
19 Hb_002749_070 0.1285088603 - - PREDICTED: uncharacterized protein LOC105635941 [Jatropha curcas]
20 Hb_005116_010 0.1303761755 transcription factor TF Family: bHLH PREDICTED: basic helix-loop-helix protein A [Jatropha curcas]

Gene co-expression network

sample Hb_000005_350 Hb_000005_350 Hb_011861_020 Hb_011861_020 Hb_000005_350--Hb_011861_020 Hb_010334_040 Hb_010334_040 Hb_000005_350--Hb_010334_040 Hb_000589_100 Hb_000589_100 Hb_000005_350--Hb_000589_100 Hb_000684_490 Hb_000684_490 Hb_000005_350--Hb_000684_490 Hb_116469_010 Hb_116469_010 Hb_000005_350--Hb_116469_010 Hb_001691_060 Hb_001691_060 Hb_000005_350--Hb_001691_060 Hb_000471_010 Hb_000471_010 Hb_011861_020--Hb_000471_010 Hb_150730_010 Hb_150730_010 Hb_011861_020--Hb_150730_010 Hb_011861_020--Hb_116469_010 Hb_000057_180 Hb_000057_180 Hb_011861_020--Hb_000057_180 Hb_011861_020--Hb_000684_490 Hb_005116_010 Hb_005116_010 Hb_010334_040--Hb_005116_010 Hb_000025_740 Hb_000025_740 Hb_010334_040--Hb_000025_740 Hb_010334_040--Hb_000684_490 Hb_010334_040--Hb_000471_010 Hb_005010_040 Hb_005010_040 Hb_010334_040--Hb_005010_040 Hb_000589_100--Hb_011861_020 Hb_000723_240 Hb_000723_240 Hb_000589_100--Hb_000723_240 Hb_028927_010 Hb_028927_010 Hb_000589_100--Hb_028927_010 Hb_000589_100--Hb_000025_740 Hb_000589_100--Hb_001691_060 Hb_000684_490--Hb_000471_010 Hb_004586_110 Hb_004586_110 Hb_000684_490--Hb_004586_110 Hb_000684_490--Hb_116469_010 Hb_002003_030 Hb_002003_030 Hb_116469_010--Hb_002003_030 Hb_116469_010--Hb_028927_010 Hb_116469_010--Hb_150730_010 Hb_116469_010--Hb_000057_180 Hb_011145_020 Hb_011145_020 Hb_001691_060--Hb_011145_020 Hb_000075_030 Hb_000075_030 Hb_001691_060--Hb_000075_030 Hb_000917_330 Hb_000917_330 Hb_001691_060--Hb_000917_330 Hb_001922_010 Hb_001922_010 Hb_001691_060--Hb_001922_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.598332 0.949243 0.728433 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 4.27701 0.393829

CAGE analysis