Hb_000005_360

Information

Type -
Description -
Location Contig5: 469000-472643
Sequence    

Annotation

kegg
ID rcu:RCOM_0485220
description hypothetical protein
nr
ID XP_002532979.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q0WQ57
description Auxilin-related protein 2 OS=Arabidopsis thaliana GN=At4g12770 PE=1 SV=1
trembl
ID B9T410
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0485220 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45719: 468961-471251 , PASA_asmbl_45720: 469171-470874 , PASA_asmbl_45721: 471645-472699
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000005_360 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000329_720 0.0707344816 transcription factor TF Family: ERF hypothetical protein POPTR_0014s05500g [Populus trichocarpa]
3 Hb_002171_020 0.0838411375 - - protein phosphatase 2a, regulatory subunit, putative [Ricinus communis]
4 Hb_009189_100 0.0920503413 - - PREDICTED: patellin-6 [Jatropha curcas]
5 Hb_012404_020 0.0972741774 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000742_130 0.0991230655 - - PREDICTED: probable receptor-like protein kinase At1g30570 [Jatropha curcas]
7 Hb_009113_080 0.1016142087 - - PREDICTED: deoxynucleoside triphosphate triphosphohydrolase SAMHD1 homolog [Jatropha curcas]
8 Hb_001085_190 0.1049447813 transcription factor TF Family: ERF AP2 domain-containing transcription factor family protein [Populus trichocarpa]
9 Hb_011918_070 0.1055912315 - - PREDICTED: probable inactive receptor kinase At1g48480 [Jatropha curcas]
10 Hb_003992_020 0.1094999323 - - PREDICTED: phosphatidylcholine:diacylglycerol cholinephosphotransferase 1-like [Jatropha curcas]
11 Hb_015934_080 0.1108449959 - - PREDICTED: glucan endo-1,3-beta-glucosidase 12 [Jatropha curcas]
12 Hb_001054_040 0.1156022768 - - hypothetical protein JCGZ_25310 [Jatropha curcas]
13 Hb_001936_180 0.1158685207 - - PREDICTED: protein NSP-INTERACTING KINASE 3 [Jatropha curcas]
14 Hb_043630_030 0.1168410745 - - leucine-rich repeat transmembrane protein kinase [Populus trichocarpa]
15 Hb_000645_160 0.1170801841 - - protein translocase, putative [Ricinus communis]
16 Hb_033312_070 0.1177115113 - - hypothetical protein POPTR_0017s02960g [Populus trichocarpa]
17 Hb_000365_430 0.1183696377 - - PREDICTED: BTB/POZ domain-containing protein At3g08570-like [Jatropha curcas]
18 Hb_007290_050 0.1196523885 - - PREDICTED: uncharacterized protein LOC105629472 isoform X1 [Jatropha curcas]
19 Hb_001366_290 0.1198118273 - - Alpha-expansin 1 precursor, putative [Ricinus communis]
20 Hb_000735_020 0.1200055082 - - Auxin-induced in root cultures protein 12 precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_000005_360 Hb_000005_360 Hb_000329_720 Hb_000329_720 Hb_000005_360--Hb_000329_720 Hb_002171_020 Hb_002171_020 Hb_000005_360--Hb_002171_020 Hb_009189_100 Hb_009189_100 Hb_000005_360--Hb_009189_100 Hb_012404_020 Hb_012404_020 Hb_000005_360--Hb_012404_020 Hb_000742_130 Hb_000742_130 Hb_000005_360--Hb_000742_130 Hb_009113_080 Hb_009113_080 Hb_000005_360--Hb_009113_080 Hb_000329_720--Hb_009189_100 Hb_000329_720--Hb_002171_020 Hb_092975_010 Hb_092975_010 Hb_000329_720--Hb_092975_010 Hb_000365_430 Hb_000365_430 Hb_000329_720--Hb_000365_430 Hb_000329_720--Hb_000742_130 Hb_002171_020--Hb_009189_100 Hb_178049_010 Hb_178049_010 Hb_002171_020--Hb_178049_010 Hb_004558_060 Hb_004558_060 Hb_002171_020--Hb_004558_060 Hb_015934_080 Hb_015934_080 Hb_002171_020--Hb_015934_080 Hb_007290_050 Hb_007290_050 Hb_009189_100--Hb_007290_050 Hb_009189_100--Hb_015934_080 Hb_009189_100--Hb_000365_430 Hb_000310_110 Hb_000310_110 Hb_009189_100--Hb_000310_110 Hb_070498_010 Hb_070498_010 Hb_012404_020--Hb_070498_010 Hb_002301_400 Hb_002301_400 Hb_012404_020--Hb_002301_400 Hb_128196_010 Hb_128196_010 Hb_012404_020--Hb_128196_010 Hb_005730_110 Hb_005730_110 Hb_012404_020--Hb_005730_110 Hb_001366_290 Hb_001366_290 Hb_012404_020--Hb_001366_290 Hb_028008_040 Hb_028008_040 Hb_012404_020--Hb_028008_040 Hb_000645_160 Hb_000645_160 Hb_000742_130--Hb_000645_160 Hb_002518_220 Hb_002518_220 Hb_000742_130--Hb_002518_220 Hb_000098_260 Hb_000098_260 Hb_000742_130--Hb_000098_260 Hb_006120_210 Hb_006120_210 Hb_000742_130--Hb_006120_210 Hb_000742_130--Hb_092975_010 Hb_001946_200 Hb_001946_200 Hb_009113_080--Hb_001946_200 Hb_001085_190 Hb_001085_190 Hb_009113_080--Hb_001085_190 Hb_000977_030 Hb_000977_030 Hb_009113_080--Hb_000977_030 Hb_003125_210 Hb_003125_210 Hb_009113_080--Hb_003125_210 Hb_001318_100 Hb_001318_100 Hb_009113_080--Hb_001318_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.271195 2.68966 7.18161 12.0539 0.0735008 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0226408 0.042649 1.85994 4.32262

CAGE analysis