Hb_000005_380

Information

Type -
Description -
Location Contig5: 475927-484398
Sequence    

Annotation

kegg
ID rcu:RCOM_0485200
description hypothetical protein
nr
ID XP_012072158.1
description PREDICTED: uncharacterized protein LOC105634023 isoform X1 [Jatropha curcas]
swissprot
ID Q5M8S7
description NIPA-like protein OS=Xenopus tropicalis GN=zc3hc1 PE=2 SV=1
trembl
ID A0A067L1M7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04652 PE=4 SV=1
Gene Ontology
ID GO:0005634
description iap-like protein 1 isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45724: 475570-484424 , PASA_asmbl_45725: 477479-477643 , PASA_asmbl_45726: 477986-478474
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000005_380 0.0 - - PREDICTED: uncharacterized protein LOC105634023 isoform X1 [Jatropha curcas]
2 Hb_007586_030 0.0495845179 - - PREDICTED: pentatricopeptide repeat-containing protein At2g15690-like isoform X1 [Jatropha curcas]
3 Hb_000244_250 0.0540649583 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 38 isoform X1 [Jatropha curcas]
4 Hb_123777_030 0.0578629679 transcription factor TF Family: SNF2 PREDICTED: DNA helicase INO80 isoform X2 [Jatropha curcas]
5 Hb_011318_010 0.0711412082 - - PREDICTED: peroxisome biogenesis protein 5 [Jatropha curcas]
6 Hb_005977_090 0.0760004364 - - PREDICTED: F-box/kelch-repeat protein At1g16250 [Jatropha curcas]
7 Hb_004055_040 0.0767001712 - - Phospholipid-transporting ATPase, putative [Ricinus communis]
8 Hb_004452_100 0.0769306581 - - PREDICTED: uncharacterized protein LOC105639563 [Jatropha curcas]
9 Hb_000390_070 0.077931961 - - PREDICTED: uncharacterized protein LOC105632478 isoform X1 [Jatropha curcas]
10 Hb_007757_110 0.0786134164 - - PREDICTED: E3 ubiquitin-protein ligase UPL5 [Jatropha curcas]
11 Hb_001797_050 0.0786152196 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 3-like isoform X1 [Jatropha curcas]
12 Hb_002307_100 0.0814698281 - - PREDICTED: protein transport protein sec23-1 [Jatropha curcas]
13 Hb_022408_010 0.0816667196 - - PREDICTED: protein SUPPRESSOR OF GENE SILENCING 3 [Jatropha curcas]
14 Hb_003406_040 0.0826363705 - - PREDICTED: ATP-dependent RNA helicase DHX36 [Jatropha curcas]
15 Hb_005730_030 0.0842391767 - - eukaryotic translation initiation factor 3 subunit, putative [Ricinus communis]
16 Hb_090804_010 0.0868112176 - - ATP-dependent RNA helicase, putative [Ricinus communis]
17 Hb_003362_040 0.0873008017 - - PREDICTED: probable methionine--tRNA ligase [Jatropha curcas]
18 Hb_000977_180 0.0877480268 - - PREDICTED: splicing factor U2AF-associated protein 2 isoform X1 [Jatropha curcas]
19 Hb_000230_080 0.0879179019 - - PREDICTED: serine/threonine-protein kinase EDR1 [Jatropha curcas]
20 Hb_000627_080 0.0879337362 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 48-like [Jatropha curcas]

Gene co-expression network

sample Hb_000005_380 Hb_000005_380 Hb_007586_030 Hb_007586_030 Hb_000005_380--Hb_007586_030 Hb_000244_250 Hb_000244_250 Hb_000005_380--Hb_000244_250 Hb_123777_030 Hb_123777_030 Hb_000005_380--Hb_123777_030 Hb_011318_010 Hb_011318_010 Hb_000005_380--Hb_011318_010 Hb_005977_090 Hb_005977_090 Hb_000005_380--Hb_005977_090 Hb_004055_040 Hb_004055_040 Hb_000005_380--Hb_004055_040 Hb_007586_030--Hb_000244_250 Hb_000977_180 Hb_000977_180 Hb_007586_030--Hb_000977_180 Hb_006649_060 Hb_006649_060 Hb_007586_030--Hb_006649_060 Hb_007586_030--Hb_123777_030 Hb_002150_030 Hb_002150_030 Hb_007586_030--Hb_002150_030 Hb_000915_050 Hb_000915_050 Hb_000244_250--Hb_000915_050 Hb_022408_010 Hb_022408_010 Hb_000244_250--Hb_022408_010 Hb_001541_020 Hb_001541_020 Hb_000244_250--Hb_001541_020 Hb_003362_040 Hb_003362_040 Hb_000244_250--Hb_003362_040 Hb_003406_040 Hb_003406_040 Hb_123777_030--Hb_003406_040 Hb_001871_040 Hb_001871_040 Hb_123777_030--Hb_001871_040 Hb_123777_030--Hb_000977_180 Hb_123777_030--Hb_004055_040 Hb_004452_100 Hb_004452_100 Hb_011318_010--Hb_004452_100 Hb_002798_040 Hb_002798_040 Hb_011318_010--Hb_002798_040 Hb_090804_010 Hb_090804_010 Hb_011318_010--Hb_090804_010 Hb_011318_010--Hb_000244_250 Hb_002054_040 Hb_002054_040 Hb_011318_010--Hb_002054_040 Hb_028487_110 Hb_028487_110 Hb_005977_090--Hb_028487_110 Hb_001638_250 Hb_001638_250 Hb_005977_090--Hb_001638_250 Hb_001866_110 Hb_001866_110 Hb_005977_090--Hb_001866_110 Hb_005977_090--Hb_007586_030 Hb_000803_300 Hb_000803_300 Hb_005977_090--Hb_000803_300 Hb_000522_090 Hb_000522_090 Hb_005977_090--Hb_000522_090 Hb_002928_060 Hb_002928_060 Hb_004055_040--Hb_002928_060 Hb_005730_030 Hb_005730_030 Hb_004055_040--Hb_005730_030 Hb_001366_040 Hb_001366_040 Hb_004055_040--Hb_001366_040 Hb_004055_040--Hb_001871_040 Hb_004055_040--Hb_000244_250 Hb_004055_040--Hb_000915_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
52.1566 30.0281 12.4552 14.9934 61.1116 70.1851
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
36.3313 18.7687 58.8615 29.4159 27.7618

CAGE analysis