Hb_000006_040

Information

Type -
Description -
Location Contig6: 35429-44046
Sequence    

Annotation

kegg
ID rcu:RCOM_0477820
description dead box ATP-dependent RNA helicase, putative
nr
ID XP_002532829.1
description dead box ATP-dependent RNA helicase, putative [Ricinus communis]
swissprot
ID Q7FGZ2
description DEAD-box ATP-dependent RNA helicase 1 OS=Arabidopsis thaliana GN=RH1 PE=2 SV=3
trembl
ID B9T3L1
description Dead box ATP-dependent RNA helicase, putative OS=Ricinus communis GN=RCOM_0477820 PE=4 SV=1
Gene Ontology
ID GO:0003676
description dead-box atp-dependent rna helicase 1 isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50537: 35273-36147 , PASA_asmbl_50538: 43601-44031
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000006_040 0.0 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
2 Hb_000165_040 0.0586469919 - - hypothetical protein JCGZ_01206 [Jatropha curcas]
3 Hb_004254_090 0.0618755474 - - PREDICTED: cleavage stimulating factor 64 [Jatropha curcas]
4 Hb_183510_020 0.0619825211 - - coated vesicle membrane protein, putative [Ricinus communis]
5 Hb_001235_150 0.0673415968 - - PREDICTED: chaperone protein dnaJ 13 isoform X1 [Jatropha curcas]
6 Hb_033642_090 0.070067858 - - conserved hypothetical protein [Ricinus communis]
7 Hb_005867_070 0.0723751387 - - DNA binding protein, putative [Ricinus communis]
8 Hb_000406_200 0.0729383345 - - PREDICTED: translation initiation factor eIF-2B subunit epsilon-like isoform X4 [Jatropha curcas]
9 Hb_000329_800 0.0746246324 - - conserved hypothetical protein [Ricinus communis]
10 Hb_123915_040 0.0750619622 - - PREDICTED: uncharacterized protein LOC105633952 [Jatropha curcas]
11 Hb_003411_040 0.0754753695 - - unnamed protein product [Coffea canephora]
12 Hb_001876_050 0.0755932338 - - hypothetical protein JCGZ_01286 [Jatropha curcas]
13 Hb_000731_270 0.0758137595 - - PREDICTED: polyadenylate-binding protein RBP45B isoform X1 [Jatropha curcas]
14 Hb_000935_010 0.0767891277 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 16 [Jatropha curcas]
15 Hb_000138_100 0.0784061326 - - bifunctional purine biosynthesis protein, putative [Ricinus communis]
16 Hb_000441_120 0.0786022384 - - PREDICTED: DNA-damage-repair/toleration protein DRT111, chloroplastic isoform X1 [Jatropha curcas]
17 Hb_005000_170 0.0786095576 - - PREDICTED: WD-40 repeat-containing protein MSI4 [Jatropha curcas]
18 Hb_002592_060 0.0789212085 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001408_140 0.0792918186 - - hypothetical protein JCGZ_00234 [Jatropha curcas]
20 Hb_001814_030 0.0795491164 - - PREDICTED: uncharacterized protein LOC105650634 [Jatropha curcas]

Gene co-expression network

sample Hb_000006_040 Hb_000006_040 Hb_000165_040 Hb_000165_040 Hb_000006_040--Hb_000165_040 Hb_004254_090 Hb_004254_090 Hb_000006_040--Hb_004254_090 Hb_183510_020 Hb_183510_020 Hb_000006_040--Hb_183510_020 Hb_001235_150 Hb_001235_150 Hb_000006_040--Hb_001235_150 Hb_033642_090 Hb_033642_090 Hb_000006_040--Hb_033642_090 Hb_005867_070 Hb_005867_070 Hb_000006_040--Hb_005867_070 Hb_000165_040--Hb_005867_070 Hb_000441_120 Hb_000441_120 Hb_000165_040--Hb_000441_120 Hb_000935_010 Hb_000935_010 Hb_000165_040--Hb_000935_010 Hb_000174_170 Hb_000174_170 Hb_000165_040--Hb_000174_170 Hb_001021_150 Hb_001021_150 Hb_000165_040--Hb_001021_150 Hb_000138_100 Hb_000138_100 Hb_004254_090--Hb_000138_100 Hb_002592_060 Hb_002592_060 Hb_004254_090--Hb_002592_060 Hb_123915_040 Hb_123915_040 Hb_004254_090--Hb_123915_040 Hb_007479_040 Hb_007479_040 Hb_004254_090--Hb_007479_040 Hb_004846_220 Hb_004846_220 Hb_004254_090--Hb_004846_220 Hb_002518_260 Hb_002518_260 Hb_004254_090--Hb_002518_260 Hb_000025_690 Hb_000025_690 Hb_183510_020--Hb_000025_690 Hb_183510_020--Hb_005867_070 Hb_000011_100 Hb_000011_100 Hb_183510_020--Hb_000011_100 Hb_000710_040 Hb_000710_040 Hb_183510_020--Hb_000710_040 Hb_001301_150 Hb_001301_150 Hb_183510_020--Hb_001301_150 Hb_001235_150--Hb_033642_090 Hb_001235_150--Hb_004254_090 Hb_001357_250 Hb_001357_250 Hb_001235_150--Hb_001357_250 Hb_001235_150--Hb_000165_040 Hb_000696_230 Hb_000696_230 Hb_001235_150--Hb_000696_230 Hb_033642_090--Hb_001357_250 Hb_000907_110 Hb_000907_110 Hb_033642_090--Hb_000907_110 Hb_002784_020 Hb_002784_020 Hb_033642_090--Hb_002784_020 Hb_006831_140 Hb_006831_140 Hb_033642_090--Hb_006831_140 Hb_033642_090--Hb_123915_040 Hb_033642_090--Hb_000696_230 Hb_003861_050 Hb_003861_050 Hb_005867_070--Hb_003861_050 Hb_004837_180 Hb_004837_180 Hb_005867_070--Hb_004837_180 Hb_005730_040 Hb_005730_040 Hb_005867_070--Hb_005730_040 Hb_007590_020 Hb_007590_020 Hb_005867_070--Hb_007590_020 Hb_000339_040 Hb_000339_040 Hb_005867_070--Hb_000339_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.16993 4.93767 5.55388 3.646 6.0755 5.15033
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.42007 5.0168 4.47637 7.24352 5.20473

CAGE analysis