Hb_000007_010

Information

Type -
Description -
Location Contig7: 17843-44902
Sequence    

Annotation

kegg
ID rcu:RCOM_1465190
description menaquinone biosynthesis protein, putative (EC:3.1.1.1)
nr
ID XP_012080490.1
description PREDICTED: protein PHYLLO, chloroplastic [Jatropha curcas]
swissprot
ID Q15KI9
description Protein PHYLLO, chloroplastic OS=Arabidopsis thaliana GN=PHYLLO PE=2 SV=2
trembl
ID B9RLD6
description Menaquinone biosynthesis protein, putative OS=Ricinus communis GN=RCOM_1465190 PE=3 SV=1
Gene Ontology
ID GO:0030976
description protein chloroplastic isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54713: 18444-20346 , PASA_asmbl_54714: 20391-21370 , PASA_asmbl_54715: 21454-23946 , PASA_asmbl_54716: 24419-24894 , PASA_asmbl_54717: 25731-27322 , PASA_asmbl_54718: 28277-29461 , PASA_asmbl_54719: 36158-36306 , PASA_asmbl_54720: 37700-40496 , PASA_asmbl_54721: 40044-40483 , PASA_asmbl_54722: 37570-43254
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000007_010 0.0 - - PREDICTED: protein PHYLLO, chloroplastic [Jatropha curcas]
2 Hb_001005_130 0.0800539479 - - PREDICTED: uncharacterized protein LOC105630220 isoform X4 [Jatropha curcas]
3 Hb_000749_090 0.0852335859 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
4 Hb_000856_070 0.0866513893 - - PREDICTED: formin-like protein 5 [Jatropha curcas]
5 Hb_001589_010 0.0886489952 - - PREDICTED: uncharacterized protein LOC105638192 isoform X1 [Jatropha curcas]
6 Hb_001790_080 0.089723549 - - PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic isoform X3 [Jatropha curcas]
7 Hb_018118_010 0.0904740903 - - DNA polymerase I, putative [Ricinus communis]
8 Hb_000130_320 0.0923798873 desease resistance Gene Name: AAA PREDICTED: uncharacterized protein ycf45 [Jatropha curcas]
9 Hb_005276_200 0.095191965 - - PREDICTED: preprotein translocase subunit SCY2, chloroplastic [Jatropha curcas]
10 Hb_000349_240 0.0974522493 - - PREDICTED: probable aminotransferase ACS10 isoform X1 [Jatropha curcas]
11 Hb_006816_370 0.0986587779 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105647456 [Jatropha curcas]
12 Hb_017469_110 0.0987538528 - - PREDICTED: uncharacterized protein LOC105641795 [Jatropha curcas]
13 Hb_000265_230 0.0988768369 transcription factor TF Family: HB PREDICTED: uncharacterized protein LOC105643603 isoform X1 [Jatropha curcas]
14 Hb_000599_270 0.101167182 - - PREDICTED: serine/threonine protein phosphatase 2A regulatory subunit B''beta isoform X3 [Jatropha curcas]
15 Hb_000720_050 0.1017182565 - - PREDICTED: uncharacterized protein LOC105645857 isoform X1 [Jatropha curcas]
16 Hb_000672_040 0.1024894913 - - PREDICTED: ENHANCER OF AG-4 protein 2 [Jatropha curcas]
17 Hb_002581_010 0.1038909675 - - PREDICTED: uncharacterized protein LOC105641469 isoform X2 [Jatropha curcas]
18 Hb_000329_750 0.1039729613 - - PREDICTED: uncharacterized protein LOC105643205 [Jatropha curcas]
19 Hb_012244_020 0.104176598 - - calpain, putative [Ricinus communis]
20 Hb_002205_230 0.1047727421 - - glycerol-3-phosphate dehydrogenase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000007_010 Hb_000007_010 Hb_001005_130 Hb_001005_130 Hb_000007_010--Hb_001005_130 Hb_000749_090 Hb_000749_090 Hb_000007_010--Hb_000749_090 Hb_000856_070 Hb_000856_070 Hb_000007_010--Hb_000856_070 Hb_001589_010 Hb_001589_010 Hb_000007_010--Hb_001589_010 Hb_001790_080 Hb_001790_080 Hb_000007_010--Hb_001790_080 Hb_018118_010 Hb_018118_010 Hb_000007_010--Hb_018118_010 Hb_000193_330 Hb_000193_330 Hb_001005_130--Hb_000193_330 Hb_000538_280 Hb_000538_280 Hb_001005_130--Hb_000538_280 Hb_006816_370 Hb_006816_370 Hb_001005_130--Hb_006816_370 Hb_000665_120 Hb_000665_120 Hb_001005_130--Hb_000665_120 Hb_001377_190 Hb_001377_190 Hb_001005_130--Hb_001377_190 Hb_008387_020 Hb_008387_020 Hb_000749_090--Hb_008387_020 Hb_000731_010 Hb_000731_010 Hb_000749_090--Hb_000731_010 Hb_009252_040 Hb_009252_040 Hb_000749_090--Hb_009252_040 Hb_000130_320 Hb_000130_320 Hb_000749_090--Hb_000130_320 Hb_000568_050 Hb_000568_050 Hb_000749_090--Hb_000568_050 Hb_007763_070 Hb_007763_070 Hb_000749_090--Hb_007763_070 Hb_000656_060 Hb_000656_060 Hb_000856_070--Hb_000656_060 Hb_012244_020 Hb_012244_020 Hb_000856_070--Hb_012244_020 Hb_011021_050 Hb_011021_050 Hb_000856_070--Hb_011021_050 Hb_000925_090 Hb_000925_090 Hb_000856_070--Hb_000925_090 Hb_097185_010 Hb_097185_010 Hb_000856_070--Hb_097185_010 Hb_005408_030 Hb_005408_030 Hb_000856_070--Hb_005408_030 Hb_002205_230 Hb_002205_230 Hb_001589_010--Hb_002205_230 Hb_000720_050 Hb_000720_050 Hb_001589_010--Hb_000720_050 Hb_001936_090 Hb_001936_090 Hb_001589_010--Hb_001936_090 Hb_005116_050 Hb_005116_050 Hb_001589_010--Hb_005116_050 Hb_001789_110 Hb_001789_110 Hb_001589_010--Hb_001789_110 Hb_004450_040 Hb_004450_040 Hb_001589_010--Hb_004450_040 Hb_001790_080--Hb_000130_320 Hb_000349_240 Hb_000349_240 Hb_001790_080--Hb_000349_240 Hb_029584_070 Hb_029584_070 Hb_001790_080--Hb_029584_070 Hb_001163_060 Hb_001163_060 Hb_001790_080--Hb_001163_060 Hb_003475_020 Hb_003475_020 Hb_001790_080--Hb_003475_020 Hb_001790_080--Hb_001936_090 Hb_000331_560 Hb_000331_560 Hb_018118_010--Hb_000331_560 Hb_000265_230 Hb_000265_230 Hb_018118_010--Hb_000265_230 Hb_003203_030 Hb_003203_030 Hb_018118_010--Hb_003203_030 Hb_018118_010--Hb_009252_040 Hb_000679_020 Hb_000679_020 Hb_018118_010--Hb_000679_020 Hb_004003_040 Hb_004003_040 Hb_018118_010--Hb_004003_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.68527 2.38996 1.49679 0.915932 1.35963 1.63857
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.65721 1.35833 1.20471 1.99247 4.04681

CAGE analysis