Hb_000007_030

Information

Type -
Description -
Location Contig7: 57757-63906
Sequence    

Annotation

kegg
ID rcu:RCOM_1465120
description rubisco subunit binding-protein beta subunit, rubb, putative
nr
ID XP_012080491.1
description PREDICTED: chaperonin 60 subunit beta 4, chloroplastic isoform X1 [Jatropha curcas]
swissprot
ID Q9C667
description Chaperonin 60 subunit beta 4, chloroplastic OS=Arabidopsis thaliana GN=CPN60B4 PE=1 SV=1
trembl
ID A0A067KHV8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11805 PE=3 SV=1
Gene Ontology
ID GO:0009941
description chaperonin-60 beta4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54723: 57809-63816 , PASA_asmbl_54724: 59132-62306 , PASA_asmbl_54725: 59212-60206
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000007_030 0.0 - - PREDICTED: chaperonin 60 subunit beta 4, chloroplastic isoform X1 [Jatropha curcas]
2 Hb_000787_210 0.1197758144 - - conserved hypothetical protein [Ricinus communis]
3 Hb_005063_060 0.1237086922 transcription factor TF Family: GNAT PREDICTED: uncharacterized protein LOC105647704 [Jatropha curcas]
4 Hb_002814_010 0.1255281077 - - PREDICTED: adenylate kinase 5, chloroplastic [Jatropha curcas]
5 Hb_004291_050 0.1439911386 - - hypothetical protein POPTR_0018s09540g [Populus trichocarpa]
6 Hb_000208_270 0.1455717062 - - PREDICTED: malate dehydrogenase [NADP], chloroplastic [Jatropha curcas]
7 Hb_020141_030 0.1464959027 - - solanesyl diphosphate synthase, putative [Ricinus communis]
8 Hb_001775_100 0.1468361202 - - PREDICTED: probable 2-carboxy-D-arabinitol-1-phosphatase [Jatropha curcas]
9 Hb_119600_030 0.1469209523 - - PREDICTED: uncharacterized protein LOC105635187 [Jatropha curcas]
10 Hb_004934_130 0.1484413652 - - 12-oxophytodienoate reductase 2 isoform 1 [Theobroma cacao]
11 Hb_001541_280 0.1488589937 - - phosphate transporter [Manihot esculenta]
12 Hb_000847_030 0.1492317208 - - PREDICTED: asparagine--tRNA ligase, cytoplasmic 2 [Jatropha curcas]
13 Hb_000618_110 0.1533837477 - - hypothetical protein POPTR_0003s09870g [Populus trichocarpa]
14 Hb_034507_050 0.1553125656 - - PREDICTED: uncharacterized protein LOC105646633 isoform X2 [Jatropha curcas]
15 Hb_002003_130 0.1555590368 - - hypothetical protein CISIN_1g027843mg [Citrus sinensis]
16 Hb_000103_230 0.1562362203 - - PREDICTED: chlorophyllase-2, chloroplastic [Jatropha curcas]
17 Hb_022693_080 0.1566909582 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4 [Jatropha curcas]
18 Hb_016924_010 0.1590680626 - - conserved hypothetical protein [Ricinus communis]
19 Hb_004117_320 0.1592164073 - - PREDICTED: probable serine/threonine-protein kinase WNK5 [Jatropha curcas]
20 Hb_000130_140 0.159663117 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105639203 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000007_030 Hb_000007_030 Hb_000787_210 Hb_000787_210 Hb_000007_030--Hb_000787_210 Hb_005063_060 Hb_005063_060 Hb_000007_030--Hb_005063_060 Hb_002814_010 Hb_002814_010 Hb_000007_030--Hb_002814_010 Hb_004291_050 Hb_004291_050 Hb_000007_030--Hb_004291_050 Hb_000208_270 Hb_000208_270 Hb_000007_030--Hb_000208_270 Hb_020141_030 Hb_020141_030 Hb_000007_030--Hb_020141_030 Hb_000103_230 Hb_000103_230 Hb_000787_210--Hb_000103_230 Hb_000787_210--Hb_020141_030 Hb_000056_110 Hb_000056_110 Hb_000787_210--Hb_000056_110 Hb_000787_210--Hb_000208_270 Hb_034507_050 Hb_034507_050 Hb_000787_210--Hb_034507_050 Hb_001252_030 Hb_001252_030 Hb_000787_210--Hb_001252_030 Hb_001775_100 Hb_001775_100 Hb_005063_060--Hb_001775_100 Hb_001257_110 Hb_001257_110 Hb_005063_060--Hb_001257_110 Hb_002003_130 Hb_002003_130 Hb_005063_060--Hb_002003_130 Hb_119600_030 Hb_119600_030 Hb_005063_060--Hb_119600_030 Hb_004117_200 Hb_004117_200 Hb_005063_060--Hb_004117_200 Hb_001584_210 Hb_001584_210 Hb_005063_060--Hb_001584_210 Hb_001541_280 Hb_001541_280 Hb_002814_010--Hb_001541_280 Hb_004934_130 Hb_004934_130 Hb_002814_010--Hb_004934_130 Hb_000679_320 Hb_000679_320 Hb_002814_010--Hb_000679_320 Hb_002814_010--Hb_020141_030 Hb_002814_010--Hb_000208_270 Hb_000359_160 Hb_000359_160 Hb_002814_010--Hb_000359_160 Hb_004979_080 Hb_004979_080 Hb_004291_050--Hb_004979_080 Hb_004979_070 Hb_004979_070 Hb_004291_050--Hb_004979_070 Hb_000011_440 Hb_000011_440 Hb_004291_050--Hb_000011_440 Hb_007904_110 Hb_007904_110 Hb_004291_050--Hb_007904_110 Hb_000644_010 Hb_000644_010 Hb_004291_050--Hb_000644_010 Hb_027337_130 Hb_027337_130 Hb_004291_050--Hb_027337_130 Hb_000208_270--Hb_020141_030 Hb_010098_040 Hb_010098_040 Hb_000208_270--Hb_010098_040 Hb_000538_300 Hb_000538_300 Hb_000208_270--Hb_000538_300 Hb_000966_040 Hb_000966_040 Hb_000208_270--Hb_000966_040 Hb_020141_030--Hb_001541_280 Hb_003018_150 Hb_003018_150 Hb_020141_030--Hb_003018_150 Hb_003058_170 Hb_003058_170 Hb_020141_030--Hb_003058_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.706863 6.45669 12.4177 11.8093 0.0456211 2.79312
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0697051 0.123413 0.156889 1.23052 35.7161

CAGE analysis