Hb_000007_150

Information

Type -
Description -
Location Contig7: 144270-146252
Sequence    

Annotation

kegg
ID pxb:103967413
description pentatricopeptide repeat-containing protein At2g41080
nr
ID XP_012080502.1
description PREDICTED: pentatricopeptide repeat-containing protein At2g41080 [Jatropha curcas]
swissprot
ID Q8S9M4
description Pentatricopeptide repeat-containing protein At2g41080 OS=Arabidopsis thaliana GN=PCMP-H29 PE=2 SV=2
trembl
ID A0A067K5N7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11813 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000007_150 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At2g41080 [Jatropha curcas]
2 Hb_029584_130 0.0690216408 - - PREDICTED: uncharacterized protein LOC105637865 [Jatropha curcas]
3 Hb_000019_130 0.081517937 - - PREDICTED: putative pentatricopeptide repeat-containing protein At2g01510 [Jatropha curcas]
4 Hb_000000_250 0.0815441339 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g19290 [Jatropha curcas]
5 Hb_034585_060 0.0817970516 - - PREDICTED: pentatricopeptide repeat-containing protein At3g50420 [Jatropha curcas]
6 Hb_000297_200 0.0824989549 - - PREDICTED: pentatricopeptide repeat-containing protein At2g33760-like [Vitis vinifera]
7 Hb_000427_050 0.0829160313 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
8 Hb_027472_170 0.084285248 - - hypothetical protein POPTR_0007s08080g [Populus trichocarpa]
9 Hb_000307_030 0.0885836424 - - PREDICTED: pentatricopeptide repeat-containing protein At5g40410, mitochondrial [Jatropha curcas]
10 Hb_006922_110 0.0892541918 - - PREDICTED: probable VAMP-like protein At1g33475 [Jatropha curcas]
11 Hb_085863_030 0.0897644896 - - PREDICTED: pentatricopeptide repeat-containing protein At1g31430 [Jatropha curcas]
12 Hb_000997_400 0.0931588897 - - PREDICTED: pentatricopeptide repeat-containing protein At1g50270 [Jatropha curcas]
13 Hb_000934_270 0.0932668284 - - PREDICTED: pentatricopeptide repeat-containing protein At3g21470 [Populus euphratica]
14 Hb_016901_010 0.0946720127 - - PREDICTED: WPP domain-interacting protein 1-like [Jatropha curcas]
15 Hb_004452_010 0.0967555998 - - PREDICTED: pentatricopeptide repeat-containing protein At3g58590 [Jatropha curcas]
16 Hb_002678_020 0.0972427402 - - PREDICTED: pentatricopeptide repeat-containing protein At2g21090-like [Jatropha curcas]
17 Hb_000086_400 0.0985280433 - - calmodulin binding protein, putative [Ricinus communis]
18 Hb_001085_170 0.099442562 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 2 isoform X1 [Jatropha curcas]
19 Hb_001507_020 0.1002813499 - - PREDICTED: pentatricopeptide repeat-containing protein At4g14170 [Jatropha curcas]
20 Hb_000457_150 0.1006075884 - - PREDICTED: transcription factor GTE8-like [Jatropha curcas]

Gene co-expression network

sample Hb_000007_150 Hb_000007_150 Hb_029584_130 Hb_029584_130 Hb_000007_150--Hb_029584_130 Hb_000019_130 Hb_000019_130 Hb_000007_150--Hb_000019_130 Hb_000000_250 Hb_000000_250 Hb_000007_150--Hb_000000_250 Hb_034585_060 Hb_034585_060 Hb_000007_150--Hb_034585_060 Hb_000297_200 Hb_000297_200 Hb_000007_150--Hb_000297_200 Hb_000427_050 Hb_000427_050 Hb_000007_150--Hb_000427_050 Hb_001159_100 Hb_001159_100 Hb_029584_130--Hb_001159_100 Hb_029584_130--Hb_034585_060 Hb_029584_130--Hb_000297_200 Hb_000754_060 Hb_000754_060 Hb_029584_130--Hb_000754_060 Hb_029584_130--Hb_000427_050 Hb_027472_170 Hb_027472_170 Hb_000019_130--Hb_027472_170 Hb_007747_200 Hb_007747_200 Hb_000019_130--Hb_007747_200 Hb_000935_050 Hb_000935_050 Hb_000019_130--Hb_000935_050 Hb_000997_400 Hb_000997_400 Hb_000019_130--Hb_000997_400 Hb_007075_050 Hb_007075_050 Hb_000019_130--Hb_007075_050 Hb_154648_010 Hb_154648_010 Hb_000000_250--Hb_154648_010 Hb_000086_400 Hb_000086_400 Hb_000000_250--Hb_000086_400 Hb_006922_110 Hb_006922_110 Hb_000000_250--Hb_006922_110 Hb_001898_220 Hb_001898_220 Hb_000000_250--Hb_001898_220 Hb_189003_080 Hb_189003_080 Hb_000000_250--Hb_189003_080 Hb_003996_020 Hb_003996_020 Hb_000000_250--Hb_003996_020 Hb_000022_250 Hb_000022_250 Hb_034585_060--Hb_000022_250 Hb_034585_060--Hb_000000_250 Hb_034585_060--Hb_001159_100 Hb_002678_020 Hb_002678_020 Hb_034585_060--Hb_002678_020 Hb_000297_200--Hb_000997_400 Hb_000457_150 Hb_000457_150 Hb_000297_200--Hb_000457_150 Hb_000297_200--Hb_000935_050 Hb_000059_220 Hb_000059_220 Hb_000297_200--Hb_000059_220 Hb_000427_050--Hb_001159_100 Hb_000427_050--Hb_002678_020 Hb_001266_060 Hb_001266_060 Hb_000427_050--Hb_001266_060 Hb_004452_010 Hb_004452_010 Hb_000427_050--Hb_004452_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.26612 3.02414 1.02716 1.93585 2.89533 5.10773
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.4378 4.49953 8.08873 2.15402 1.32564

CAGE analysis