Hb_000007_190

Information

Type -
Description -
Location Contig7: 190901-202065
Sequence    

Annotation

kegg
ID pop:POPTR_0008s10940g
description POPTRDRAFT_765964; hypothetical protein
nr
ID XP_012080513.1
description PREDICTED: protein STRICTOSIDINE SYNTHASE-LIKE 10-like [Jatropha curcas]
swissprot
ID Q4V3D9
description Protein STRICTOSIDINE SYNTHASE-LIKE 10 OS=Arabidopsis thaliana GN=SSL10 PE=2 SV=1
trembl
ID A0A067K8V0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11829 PE=4 SV=1
Gene Ontology
ID GO:0016844
description protein strictosidine synthase-like 10-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54745: 192572-192950 , PASA_asmbl_54746: 195497-196116 , PASA_asmbl_54747: 191341-196950
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000007_190 0.0 - - PREDICTED: protein STRICTOSIDINE SYNTHASE-LIKE 10-like [Jatropha curcas]
2 Hb_000392_500 0.0252926474 - - conserved hypothetical protein [Ricinus communis]
3 Hb_103225_040 0.0370851299 transcription factor TF Family: Orphans PREDICTED: zinc finger protein CONSTANS-LIKE 12-like [Jatropha curcas]
4 Hb_152868_020 0.0444565586 - - RecName: Full=2-methylbutanal oxime monooxygenase; AltName: Full=Cytochrome P450 71E7 [Manihot esculenta]
5 Hb_064445_040 0.0458187782 - - hypothetical protein POPTR_0005s09430g [Populus trichocarpa]
6 Hb_010288_010 0.0473639373 - - Beta-glucosidase, putative [Ricinus communis]
7 Hb_003793_010 0.0585342546 - - hypothetical protein JCGZ_27055 [Jatropha curcas]
8 Hb_033149_010 0.0630886377 - - PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
9 Hb_000445_410 0.0631133858 - - hypothetical protein EUGRSUZ_F02776 [Eucalyptus grandis]
10 Hb_135737_010 0.0769587374 - - hypothetical protein POPTR_0004s02760g [Populus trichocarpa]
11 Hb_006634_120 0.0778864071 - - PREDICTED: protein trichome birefringence-like 3 [Jatropha curcas]
12 Hb_004846_110 0.08719502 - - hypothetical protein JCGZ_04591 [Jatropha curcas]
13 Hb_142204_010 0.0879265397 - - pyruvate decarboxylase [Saccharum officinarum]
14 Hb_000037_150 0.0911916763 - - PREDICTED: disease resistance response protein 206-like [Jatropha curcas]
15 Hb_000347_060 0.0957051967 - - PREDICTED: uncharacterized protein LOC105631356 [Jatropha curcas]
16 Hb_064396_020 0.0960543731 - - hypothetical protein POPTR_0019s09950g [Populus trichocarpa]
17 Hb_077027_010 0.1020781084 - - hypothetical protein JCGZ_04511 [Jatropha curcas]
18 Hb_050514_030 0.1022520631 - - PREDICTED: protein trichome birefringence-like 34 [Jatropha curcas]
19 Hb_000964_080 0.1024254746 transcription factor TF Family: MYB PREDICTED: transcription factor MYB86 [Jatropha curcas]
20 Hb_019953_010 0.1038601336 - - hypothetical protein CICLE_v10019877mg [Citrus clementina]

Gene co-expression network

sample Hb_000007_190 Hb_000007_190 Hb_000392_500 Hb_000392_500 Hb_000007_190--Hb_000392_500 Hb_103225_040 Hb_103225_040 Hb_000007_190--Hb_103225_040 Hb_152868_020 Hb_152868_020 Hb_000007_190--Hb_152868_020 Hb_064445_040 Hb_064445_040 Hb_000007_190--Hb_064445_040 Hb_010288_010 Hb_010288_010 Hb_000007_190--Hb_010288_010 Hb_003793_010 Hb_003793_010 Hb_000007_190--Hb_003793_010 Hb_000392_500--Hb_064445_040 Hb_000392_500--Hb_010288_010 Hb_000392_500--Hb_103225_040 Hb_000392_500--Hb_152868_020 Hb_135737_010 Hb_135737_010 Hb_000392_500--Hb_135737_010 Hb_103225_040--Hb_152868_020 Hb_103225_040--Hb_003793_010 Hb_000445_410 Hb_000445_410 Hb_103225_040--Hb_000445_410 Hb_033149_010 Hb_033149_010 Hb_103225_040--Hb_033149_010 Hb_152868_020--Hb_003793_010 Hb_152868_020--Hb_000445_410 Hb_142204_010 Hb_142204_010 Hb_152868_020--Hb_142204_010 Hb_006634_120 Hb_006634_120 Hb_064445_040--Hb_006634_120 Hb_064445_040--Hb_010288_010 Hb_064445_040--Hb_135737_010 Hb_064445_040--Hb_103225_040 Hb_050514_030 Hb_050514_030 Hb_010288_010--Hb_050514_030 Hb_010288_010--Hb_135737_010 Hb_000347_060 Hb_000347_060 Hb_010288_010--Hb_000347_060 Hb_003793_010--Hb_000445_410 Hb_008008_040 Hb_008008_040 Hb_003793_010--Hb_008008_040 Hb_003793_010--Hb_033149_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0138399 2.91321 39.5203 0 0.0172779
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 20.7581

CAGE analysis