Hb_000007_210

Information

Type -
Description -
Location Contig7: 229627-230397
Sequence    

Annotation

kegg
ID pop:POPTR_0010s14360g
description POPTRDRAFT_566710; hypothetical protein
nr
ID XP_002315977.2
description hypothetical protein POPTR_0010s14360g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9HWQ4
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s14360g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000007_210 0.0 - - hypothetical protein POPTR_0010s14360g [Populus trichocarpa]
2 Hb_000922_290 0.0919649684 - - PREDICTED: probable boron transporter 2 [Jatropha curcas]
3 Hb_002329_030 0.0954100105 - - PREDICTED: pleiotropic drug resistance protein 2-like isoform X1 [Jatropha curcas]
4 Hb_145139_010 0.1065775426 - - PREDICTED: sugar transporter ERD6-like 5 isoform X1 [Vitis vinifera]
5 Hb_005892_010 0.1134276403 - - PREDICTED: uncharacterized protein LOC105632168 [Jatropha curcas]
6 Hb_002968_010 0.1144217743 - - PREDICTED: pectinesterase [Jatropha curcas]
7 Hb_002272_070 0.1155914821 - - PREDICTED: keratin, type I cytoskeletal 9 [Jatropha curcas]
8 Hb_000072_160 0.1171890946 - - proline oxidase [Manihot esculenta]
9 Hb_050898_010 0.1203613687 - - PREDICTED: receptor-like protein kinase FERONIA [Jatropha curcas]
10 Hb_000816_050 0.1244004417 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
11 Hb_014361_130 0.1265229995 - - PREDICTED: uncharacterized protein LOC105639824 [Jatropha curcas]
12 Hb_000656_370 0.1285634377 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
13 Hb_000101_140 0.1286337812 - - amino acid transporter, putative [Ricinus communis]
14 Hb_000723_060 0.1365538009 - - PREDICTED: uncharacterized protein LOC105642243 [Jatropha curcas]
15 Hb_002239_030 0.137496736 transcription factor TF Family: ARF PREDICTED: auxin response factor 4 [Jatropha curcas]
16 Hb_000987_080 0.1384638586 - - light-inducible protein atls1, putative [Ricinus communis]
17 Hb_000137_030 0.1392711478 - - PREDICTED: cysteine-rich repeat secretory protein 55-like [Citrus sinensis]
18 Hb_060237_010 0.1437509393 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000976_340 0.1438306987 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
20 Hb_064047_010 0.1444645637 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000007_210 Hb_000007_210 Hb_000922_290 Hb_000922_290 Hb_000007_210--Hb_000922_290 Hb_002329_030 Hb_002329_030 Hb_000007_210--Hb_002329_030 Hb_145139_010 Hb_145139_010 Hb_000007_210--Hb_145139_010 Hb_005892_010 Hb_005892_010 Hb_000007_210--Hb_005892_010 Hb_002968_010 Hb_002968_010 Hb_000007_210--Hb_002968_010 Hb_002272_070 Hb_002272_070 Hb_000007_210--Hb_002272_070 Hb_000922_290--Hb_005892_010 Hb_000987_080 Hb_000987_080 Hb_000922_290--Hb_000987_080 Hb_050898_010 Hb_050898_010 Hb_000922_290--Hb_050898_010 Hb_000656_370 Hb_000656_370 Hb_000922_290--Hb_000656_370 Hb_000922_290--Hb_145139_010 Hb_002329_030--Hb_002272_070 Hb_000072_160 Hb_000072_160 Hb_002329_030--Hb_000072_160 Hb_014361_130 Hb_014361_130 Hb_002329_030--Hb_014361_130 Hb_006615_190 Hb_006615_190 Hb_002329_030--Hb_006615_190 Hb_084127_010 Hb_084127_010 Hb_002329_030--Hb_084127_010 Hb_145139_010--Hb_002968_010 Hb_145139_010--Hb_000072_160 Hb_145139_010--Hb_000656_370 Hb_002097_210 Hb_002097_210 Hb_145139_010--Hb_002097_210 Hb_145139_010--Hb_002272_070 Hb_002475_010 Hb_002475_010 Hb_145139_010--Hb_002475_010 Hb_005892_010--Hb_050898_010 Hb_001610_050 Hb_001610_050 Hb_005892_010--Hb_001610_050 Hb_001587_220 Hb_001587_220 Hb_005892_010--Hb_001587_220 Hb_000137_030 Hb_000137_030 Hb_005892_010--Hb_000137_030 Hb_000702_040 Hb_000702_040 Hb_005892_010--Hb_000702_040 Hb_002968_010--Hb_000656_370 Hb_000101_140 Hb_000101_140 Hb_002968_010--Hb_000101_140 Hb_004122_020 Hb_004122_020 Hb_002968_010--Hb_004122_020 Hb_002968_010--Hb_000072_160 Hb_002968_010--Hb_002475_010 Hb_002272_070--Hb_000072_160 Hb_011470_010 Hb_011470_010 Hb_002272_070--Hb_011470_010 Hb_126466_010 Hb_126466_010 Hb_002272_070--Hb_126466_010 Hb_002272_070--Hb_006615_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 5.76297 0.50266 3.77582 0.0309219 0.0380251
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.111486 0 1.60406 1.11473

CAGE analysis