Hb_000007_270

Information

Type -
Description -
Location Contig7: 248884-256862
Sequence    

Annotation

kegg
ID rcu:RCOM_1464600
description hypothetical protein
nr
ID XP_002514527.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RLA8
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1464600 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54752: 253503-254445
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000007_270 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000047_100 0.0760564457 transcription factor TF Family: GRF conserved hypothetical protein [Ricinus communis]
3 Hb_003106_160 0.0794085043 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g67520 [Jatropha curcas]
4 Hb_140249_020 0.091861528 transcription factor TF Family: MIKC PREDICTED: MADS-box protein CMB1-like [Jatropha curcas]
5 Hb_000002_140 0.0951418121 - - hypothetical protein JCGZ_02318 [Jatropha curcas]
6 Hb_000815_110 0.0955858899 - - RecName: Full=Casparian strip membrane protein 4; Short=RcCASP4 [Ricinus communis]
7 Hb_001433_080 0.1002246009 - - Pectinesterase precursor, putative [Ricinus communis]
8 Hb_001856_240 0.1012686682 transcription factor TF Family: TCP Plastid transcription factor 1, putative isoform 1 [Theobroma cacao]
9 Hb_000008_160 0.1067119252 - - carboxy-lyase, putative [Ricinus communis]
10 Hb_000026_060 0.1131147352 - - beta-1,3-glucanase [Manihot esculenta]
11 Hb_000482_030 0.1132538925 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein NUTCRACKER-like isoform X1 [Populus euphratica]
12 Hb_002093_020 0.1139301661 - - hypothetical protein POPTR_0008s02960g [Populus trichocarpa]
13 Hb_000694_080 0.1145026909 - - phosphoribulose kinase, putative [Ricinus communis]
14 Hb_000010_380 0.1163230766 - - hypothetical protein CICLE_v10020897mg [Citrus clementina]
15 Hb_006665_020 0.1164099176 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4-like [Jatropha curcas]
16 Hb_002870_070 0.116750275 - - multidrug resistance pump, putative [Ricinus communis]
17 Hb_007426_070 0.1185694291 - - PREDICTED: peroxisomal (S)-2-hydroxy-acid oxidase [Jatropha curcas]
18 Hb_001006_160 0.1191529108 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
19 Hb_001089_010 0.1198696103 - - PREDICTED: GDSL esterase/lipase 5-like [Jatropha curcas]
20 Hb_001046_060 0.12071826 - - PREDICTED: UDP-glucose flavonoid 3-O-glucosyltransferase 7-like [Fragaria vesca subsp. vesca]

Gene co-expression network

sample Hb_000007_270 Hb_000007_270 Hb_000047_100 Hb_000047_100 Hb_000007_270--Hb_000047_100 Hb_003106_160 Hb_003106_160 Hb_000007_270--Hb_003106_160 Hb_140249_020 Hb_140249_020 Hb_000007_270--Hb_140249_020 Hb_000002_140 Hb_000002_140 Hb_000007_270--Hb_000002_140 Hb_000815_110 Hb_000815_110 Hb_000007_270--Hb_000815_110 Hb_001433_080 Hb_001433_080 Hb_000007_270--Hb_001433_080 Hb_000047_100--Hb_001433_080 Hb_000047_100--Hb_140249_020 Hb_006665_020 Hb_006665_020 Hb_000047_100--Hb_006665_020 Hb_001856_240 Hb_001856_240 Hb_000047_100--Hb_001856_240 Hb_001006_160 Hb_001006_160 Hb_000047_100--Hb_001006_160 Hb_002762_020 Hb_002762_020 Hb_003106_160--Hb_002762_020 Hb_000638_270 Hb_000638_270 Hb_003106_160--Hb_000638_270 Hb_025325_010 Hb_025325_010 Hb_003106_160--Hb_025325_010 Hb_002609_140 Hb_002609_140 Hb_003106_160--Hb_002609_140 Hb_007426_070 Hb_007426_070 Hb_003106_160--Hb_007426_070 Hb_140249_020--Hb_001433_080 Hb_002162_020 Hb_002162_020 Hb_140249_020--Hb_002162_020 Hb_140249_020--Hb_000815_110 Hb_140249_020--Hb_000002_140 Hb_000002_140--Hb_002162_020 Hb_001089_010 Hb_001089_010 Hb_000002_140--Hb_001089_010 Hb_012807_030 Hb_012807_030 Hb_000002_140--Hb_012807_030 Hb_000008_160 Hb_000008_160 Hb_000002_140--Hb_000008_160 Hb_000815_110--Hb_001433_080 Hb_000815_110--Hb_000047_100 Hb_002041_020 Hb_002041_020 Hb_000815_110--Hb_002041_020 Hb_000815_110--Hb_001089_010 Hb_006901_010 Hb_006901_010 Hb_001433_080--Hb_006901_010 Hb_000083_020 Hb_000083_020 Hb_001433_080--Hb_000083_020 Hb_002014_140 Hb_002014_140 Hb_001433_080--Hb_002014_140 Hb_002893_200 Hb_002893_200 Hb_001433_080--Hb_002893_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.349554 10.7968 1.32818 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0559447 0.0440215 0 0.950159 21.1541

CAGE analysis