Hb_000007_290

Information

Type -
Description -
Location Contig7: 267567-271346
Sequence    

Annotation

kegg
ID sot:102595311
description uncharacterized LOC102595311
nr
ID KFK23310.1
description hypothetical protein AALP_AAs43195U000200 [Arabis alpina]
swissprot
ID P20825
description Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster GN=pol PE=3 SV=1
trembl
ID A0A087G0A8
description Uncharacterized protein OS=Arabis alpina GN=AALP_AAs43195U000200 PE=4 SV=1
Gene Ontology
ID GO:0005488
description rna-directed dna polymerase (reverse transcriptase) chromo zinc cchc-type peptidase active site polynucleotidyl ribonuclease h fold

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000007_290 0.0 - - hypothetical protein AALP_AAs43195U000200 [Arabis alpina]
2 Hb_002010_040 0.0044771778 - - -
3 Hb_003647_070 0.0180785715 - - hypothetical protein POPTR_0006s09430g [Populus trichocarpa]
4 Hb_005474_070 0.030287249 - - hypothetical protein JCGZ_10579 [Jatropha curcas]
5 Hb_002042_220 0.0335277292 - - Kinesin heavy chain, putative [Ricinus communis]
6 Hb_045260_010 0.0415918965 - - PREDICTED: leucine-rich repeat receptor protein kinase EMS1-like [Jatropha curcas]
7 Hb_099263_010 0.0517042426 - - hypothetical protein AALP_AAs50029U000400 [Arabis alpina]
8 Hb_003058_150 0.0564642565 - - PREDICTED: gibberellin 3-beta-dioxygenase 1-like [Jatropha curcas]
9 Hb_007534_080 0.0583302663 - - d-3-phosphoglycerate dehydrogenase, putative [Ricinus communis]
10 Hb_000363_070 0.0626769428 - - conserved hypothetical protein [Ricinus communis]
11 Hb_034299_010 0.0691917509 - - F-box and wd40 domain protein, putative [Ricinus communis]
12 Hb_004197_030 0.0722015516 - - hypothetical protein JCGZ_16263 [Jatropha curcas]
13 Hb_002960_180 0.0726616348 - - PREDICTED: GDSL esterase/lipase EXL3-like [Jatropha curcas]
14 Hb_000940_120 0.0732694977 - - PREDICTED: proline-rich protein 4-like isoform X2 [Pyrus x bretschneideri]
15 Hb_001097_110 0.0748918911 - - gibberellin 20-oxidase, putative [Ricinus communis]
16 Hb_000140_040 0.0779380377 - - PREDICTED: UDP-glycosyltransferase 79B6-like [Jatropha curcas]
17 Hb_000540_080 0.0799232472 - - PREDICTED: laccase-17 [Jatropha curcas]
18 Hb_001140_110 0.0804284796 - - hypothetical protein JCGZ_26123 [Jatropha curcas]
19 Hb_094074_010 0.0816009859 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1, partial [Populus euphratica]
20 Hb_001051_020 0.0824423739 - - hypothetical protein L484_008044 [Morus notabilis]

Gene co-expression network

sample Hb_000007_290 Hb_000007_290 Hb_002010_040 Hb_002010_040 Hb_000007_290--Hb_002010_040 Hb_003647_070 Hb_003647_070 Hb_000007_290--Hb_003647_070 Hb_005474_070 Hb_005474_070 Hb_000007_290--Hb_005474_070 Hb_002042_220 Hb_002042_220 Hb_000007_290--Hb_002042_220 Hb_045260_010 Hb_045260_010 Hb_000007_290--Hb_045260_010 Hb_099263_010 Hb_099263_010 Hb_000007_290--Hb_099263_010 Hb_002010_040--Hb_003647_070 Hb_002010_040--Hb_005474_070 Hb_002010_040--Hb_002042_220 Hb_002010_040--Hb_045260_010 Hb_002010_040--Hb_099263_010 Hb_003647_070--Hb_005474_070 Hb_003647_070--Hb_045260_010 Hb_003647_070--Hb_002042_220 Hb_007534_080 Hb_007534_080 Hb_003647_070--Hb_007534_080 Hb_003058_150 Hb_003058_150 Hb_005474_070--Hb_003058_150 Hb_005474_070--Hb_002042_220 Hb_005474_070--Hb_007534_080 Hb_004197_030 Hb_004197_030 Hb_002042_220--Hb_004197_030 Hb_000940_120 Hb_000940_120 Hb_002042_220--Hb_000940_120 Hb_000363_070 Hb_000363_070 Hb_045260_010--Hb_000363_070 Hb_000540_080 Hb_000540_080 Hb_045260_010--Hb_000540_080 Hb_045260_010--Hb_099263_010 Hb_005991_030 Hb_005991_030 Hb_099263_010--Hb_005991_030 Hb_011108_010 Hb_011108_010 Hb_099263_010--Hb_011108_010 Hb_002960_180 Hb_002960_180 Hb_099263_010--Hb_002960_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.00578515 0.0176774 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.0592814

CAGE analysis