Hb_000007_310

Information

Type -
Description -
Location Contig7: 300098-302669
Sequence    

Annotation

kegg
ID pop:POPTR_0010s14370g
description POPTRDRAFT_566711; hypothetical protein
nr
ID XP_002314902.1
description hypothetical protein POPTR_0010s14370g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9HWQ5
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s14370g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000007_310 0.0 - - hypothetical protein POPTR_0010s14370g [Populus trichocarpa]
2 Hb_132629_010 0.06208734 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
3 Hb_075570_010 0.0630128448 - - -
4 Hb_177627_010 0.0805697867 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
5 Hb_003494_260 0.1116558272 - - -
6 Hb_000153_020 0.1140515139 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000153_040 0.1345281736 - - -
8 Hb_001604_110 0.1403902256 - - -
9 Hb_001892_160 0.14180444 - - PREDICTED: MLP-like protein 28-like [Citrus sinensis]
10 Hb_000345_480 0.1471408546 - - cyclin-dependent protein kinase, putative [Ricinus communis]
11 Hb_005539_320 0.1569599009 - - PREDICTED: pumilio homolog 15-like [Vitis vinifera]
12 Hb_171554_020 0.1753919688 transcription factor TF Family: HB Protein WUSCHEL, putative [Ricinus communis]
13 Hb_001741_100 0.1816543265 rubber biosynthesis Gene Name: REF6 unnamed protein product [Vitis vinifera]
14 Hb_156144_020 0.1821977906 - - PREDICTED: uncharacterized protein At5g65660 [Vitis vinifera]
15 Hb_182310_010 0.1952337577 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
16 Hb_002217_130 0.195382792 - - galactinol synthase-1 [Manihot esculenta]
17 Hb_000094_390 0.1954342989 - - PREDICTED: acyl-[acyl-carrier-protein] desaturase, chloroplastic-like [Nelumbo nucifera]
18 Hb_001178_120 0.2036459091 - - non-ltr retroelement reverse transcriptase [Rosa rugosa]
19 Hb_000200_060 0.2067584303 - - palmitoyl-acyl carrier thioesterase [Medicago truncatula]
20 Hb_013983_010 0.2140625148 - - hypothetical protein PRUPE_ppa016763mg, partial [Prunus persica]

Gene co-expression network

sample Hb_000007_310 Hb_000007_310 Hb_132629_010 Hb_132629_010 Hb_000007_310--Hb_132629_010 Hb_075570_010 Hb_075570_010 Hb_000007_310--Hb_075570_010 Hb_177627_010 Hb_177627_010 Hb_000007_310--Hb_177627_010 Hb_003494_260 Hb_003494_260 Hb_000007_310--Hb_003494_260 Hb_000153_020 Hb_000153_020 Hb_000007_310--Hb_000153_020 Hb_000153_040 Hb_000153_040 Hb_000007_310--Hb_000153_040 Hb_132629_010--Hb_075570_010 Hb_132629_010--Hb_177627_010 Hb_132629_010--Hb_003494_260 Hb_132629_010--Hb_000153_020 Hb_132629_010--Hb_000153_040 Hb_075570_010--Hb_003494_260 Hb_075570_010--Hb_177627_010 Hb_075570_010--Hb_000153_040 Hb_000345_480 Hb_000345_480 Hb_075570_010--Hb_000345_480 Hb_001604_110 Hb_001604_110 Hb_177627_010--Hb_001604_110 Hb_005539_320 Hb_005539_320 Hb_177627_010--Hb_005539_320 Hb_177627_010--Hb_000153_020 Hb_003494_260--Hb_000345_480 Hb_003494_260--Hb_000153_040 Hb_013983_010 Hb_013983_010 Hb_003494_260--Hb_013983_010 Hb_000153_020--Hb_005539_320 Hb_001178_120 Hb_001178_120 Hb_000153_020--Hb_001178_120 Hb_000153_020--Hb_075570_010 Hb_000153_040--Hb_000345_480 Hb_000153_040--Hb_013983_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
23.1908 0.067981 0.313701 0 18.5675 18.7417
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis