Hb_000007_380

Information

Type -
Description -
Location Contig7: 358266-361064
Sequence    

Annotation

kegg
ID tcc:TCM_014843
description Disease resistance family protein / LRR family protein, putative
nr
ID XP_007038270.1
description Disease resistance family protein / LRR family protein, putative [Theobroma cacao]
swissprot
ID Q9FIZ3
description LRR receptor-like serine/threonine-protein kinase GSO2 OS=Arabidopsis thaliana GN=GSO2 PE=2 SV=2
trembl
ID A0A061FZV0
description Disease resistance family protein / LRR family protein, putative OS=Theobroma cacao GN=TCM_014843 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000007_380 0.0 - - Disease resistance family protein / LRR family protein, putative [Theobroma cacao]
2 Hb_003712_010 0.1583998782 - - protein binding protein, putative [Ricinus communis]
3 Hb_006153_010 0.1806403353 - - PREDICTED: monocopper oxidase-like protein SKU5 [Populus euphratica]
4 Hb_003878_020 0.1820508892 - - Epidermis-specific secreted glycoprotein EP1 precursor, putative [Ricinus communis]
5 Hb_000003_740 0.1921293345 - - PREDICTED: uncharacterized protein LOC105631539 [Jatropha curcas]
6 Hb_000108_040 0.1983405888 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Gossypium raimondii]
7 Hb_148346_010 0.201288192 - - -
8 Hb_133508_020 0.2039314201 - - PREDICTED: L-ascorbate oxidase homolog [Jatropha curcas]
9 Hb_185830_090 0.2051924339 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000111_120 0.2056503323 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
11 Hb_096878_010 0.2060698794 - - hypothetical protein POPTR_0112s002001g, partial [Populus trichocarpa]
12 Hb_006483_060 0.2066052781 - - PREDICTED: protein RALF-like 34 [Jatropha curcas]
13 Hb_003875_040 0.2074071361 - - PREDICTED: endoglucanase 11-like [Jatropha curcas]
14 Hb_001882_150 0.2088134077 transcription factor TF Family: mTERF -
15 Hb_000077_440 0.2117622018 - - PREDICTED: ELMO domain-containing protein A isoform X1 [Jatropha curcas]
16 Hb_000635_190 0.2129583293 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103322127 [Prunus mume]
17 Hb_003050_170 0.2136058401 - - conserved hypothetical protein [Ricinus communis]
18 Hb_036176_010 0.2177339851 - - hypothetical protein CISIN_1g002055mg [Citrus sinensis]
19 Hb_006916_120 0.2179379223 - - PREDICTED: UDP-arabinopyranose mutase 1 [Jatropha curcas]
20 Hb_007590_110 0.219102475 - - PREDICTED: putative serine/threonine-protein kinase-like protein CCR3 [Jatropha curcas]

Gene co-expression network

sample Hb_000007_380 Hb_000007_380 Hb_003712_010 Hb_003712_010 Hb_000007_380--Hb_003712_010 Hb_006153_010 Hb_006153_010 Hb_000007_380--Hb_006153_010 Hb_003878_020 Hb_003878_020 Hb_000007_380--Hb_003878_020 Hb_000003_740 Hb_000003_740 Hb_000007_380--Hb_000003_740 Hb_000108_040 Hb_000108_040 Hb_000007_380--Hb_000108_040 Hb_148346_010 Hb_148346_010 Hb_000007_380--Hb_148346_010 Hb_000635_190 Hb_000635_190 Hb_003712_010--Hb_000635_190 Hb_096878_010 Hb_096878_010 Hb_003712_010--Hb_096878_010 Hb_115445_010 Hb_115445_010 Hb_003712_010--Hb_115445_010 Hb_006721_060 Hb_006721_060 Hb_003712_010--Hb_006721_060 Hb_133508_020 Hb_133508_020 Hb_003712_010--Hb_133508_020 Hb_185830_090 Hb_185830_090 Hb_003712_010--Hb_185830_090 Hb_008250_020 Hb_008250_020 Hb_006153_010--Hb_008250_020 Hb_003119_040 Hb_003119_040 Hb_006153_010--Hb_003119_040 Hb_000878_120 Hb_000878_120 Hb_006153_010--Hb_000878_120 Hb_000260_610 Hb_000260_610 Hb_006153_010--Hb_000260_610 Hb_000193_060 Hb_000193_060 Hb_006153_010--Hb_000193_060 Hb_015037_010 Hb_015037_010 Hb_006153_010--Hb_015037_010 Hb_003050_170 Hb_003050_170 Hb_003878_020--Hb_003050_170 Hb_003878_020--Hb_185830_090 Hb_001989_040 Hb_001989_040 Hb_003878_020--Hb_001989_040 Hb_003878_020--Hb_096878_010 Hb_000509_090 Hb_000509_090 Hb_003878_020--Hb_000509_090 Hb_000111_120 Hb_000111_120 Hb_003878_020--Hb_000111_120 Hb_002518_200 Hb_002518_200 Hb_000003_740--Hb_002518_200 Hb_000692_210 Hb_000692_210 Hb_000003_740--Hb_000692_210 Hb_004920_050 Hb_004920_050 Hb_000003_740--Hb_004920_050 Hb_000003_740--Hb_148346_010 Hb_114943_020 Hb_114943_020 Hb_000003_740--Hb_114943_020 Hb_000015_150 Hb_000015_150 Hb_000003_740--Hb_000015_150 Hb_002044_110 Hb_002044_110 Hb_000108_040--Hb_002044_110 Hb_001628_030 Hb_001628_030 Hb_000108_040--Hb_001628_030 Hb_004544_010 Hb_004544_010 Hb_000108_040--Hb_004544_010 Hb_004631_100 Hb_004631_100 Hb_000108_040--Hb_004631_100 Hb_004785_160 Hb_004785_160 Hb_000108_040--Hb_004785_160 Hb_008725_030 Hb_008725_030 Hb_000108_040--Hb_008725_030 Hb_002539_050 Hb_002539_050 Hb_148346_010--Hb_002539_050 Hb_004678_030 Hb_004678_030 Hb_148346_010--Hb_004678_030 Hb_000654_050 Hb_000654_050 Hb_148346_010--Hb_000654_050 Hb_010315_100 Hb_010315_100 Hb_148346_010--Hb_010315_100 Hb_001882_150 Hb_001882_150 Hb_148346_010--Hb_001882_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.737039 3.25833 7.00974 7.70717 0.203199 0.664855
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0437299 0.0344083 0.0652985 3.10661 0

CAGE analysis