Hb_000007_410

Information

Type -
Description -
Location Contig7: 386807-392448
Sequence    

Annotation

kegg
ID pvu:PHAVU_003G024000g
description hypothetical protein
nr
ID XP_011020983.1
description PREDICTED: proline-rich receptor-like protein kinase PERK9 isoform X2 [Populus euphratica]
swissprot
ID Q9CAL8
description Proline-rich receptor-like protein kinase PERK13 OS=Arabidopsis thaliana GN=PERK13 PE=2 SV=1
trembl
ID A0A0D2U5Q0
description Gossypium raimondii chromosome 8, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_008G188800 PE=4 SV=1
Gene Ontology
ID GO:0004674
description proline-rich receptor-like protein kinase perk9

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54766: 386789-387835 , PASA_asmbl_54768: 388385-392448
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000007_410 0.0 - - PREDICTED: proline-rich receptor-like protein kinase PERK9 isoform X2 [Populus euphratica]
2 Hb_004586_090 0.0803726201 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 16 isoform X1 [Jatropha curcas]
3 Hb_000015_200 0.0893549845 - - PREDICTED: LOW QUALITY PROTEIN: heat shock cognate 70 kDa protein 2-like [Jatropha curcas]
4 Hb_000271_120 0.0911506157 - - PREDICTED: U-box domain-containing protein 13-like [Nelumbo nucifera]
5 Hb_000258_090 0.091153834 - - PREDICTED: KH domain-containing protein At4g18375 isoform X2 [Jatropha curcas]
6 Hb_003964_110 0.0922279699 - - PREDICTED: pentatricopeptide repeat-containing protein At1g26460, mitochondrial [Jatropha curcas]
7 Hb_000599_360 0.093131822 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
8 Hb_005854_040 0.0956349316 - - conserved hypothetical protein [Ricinus communis]
9 Hb_003226_090 0.097245471 - - PREDICTED: bifunctional epoxide hydrolase 2 [Jatropha curcas]
10 Hb_001504_060 0.0973520641 - - PREDICTED: nuclear pore complex protein NUP93A-like [Jatropha curcas]
11 Hb_143629_020 0.0974948605 - - PREDICTED: uncharacterized protein LOC105647351 [Jatropha curcas]
12 Hb_001507_050 0.0995808413 - - PREDICTED: cysteine desulfurase 1, chloroplastic isoform X1 [Jatropha curcas]
13 Hb_160608_010 0.1020117047 - - PREDICTED: BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1-like isoform X1 [Populus euphratica]
14 Hb_011925_020 0.102039401 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
15 Hb_002849_050 0.1042313991 - - PREDICTED: probable serine/threonine-protein kinase At1g01540 [Jatropha curcas]
16 Hb_001414_010 0.1049730164 transcription factor TF Family: ARR-B two-component sensor histidine kinase bacteria, putative [Ricinus communis]
17 Hb_000125_180 0.1062499503 - - PREDICTED: flowering time control protein FPA isoform X1 [Jatropha curcas]
18 Hb_000227_320 0.1067533497 - - unnamed protein product [Vitis vinifera]
19 Hb_003680_020 0.1086798054 - - UDP-glucosyltransferase, putative [Ricinus communis]
20 Hb_003581_130 0.1101003942 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_000007_410 Hb_000007_410 Hb_004586_090 Hb_004586_090 Hb_000007_410--Hb_004586_090 Hb_000015_200 Hb_000015_200 Hb_000007_410--Hb_000015_200 Hb_000271_120 Hb_000271_120 Hb_000007_410--Hb_000271_120 Hb_000258_090 Hb_000258_090 Hb_000007_410--Hb_000258_090 Hb_003964_110 Hb_003964_110 Hb_000007_410--Hb_003964_110 Hb_000599_360 Hb_000599_360 Hb_000007_410--Hb_000599_360 Hb_143629_020 Hb_143629_020 Hb_004586_090--Hb_143629_020 Hb_000243_400 Hb_000243_400 Hb_004586_090--Hb_000243_400 Hb_003124_270 Hb_003124_270 Hb_004586_090--Hb_003124_270 Hb_005181_050 Hb_005181_050 Hb_004586_090--Hb_005181_050 Hb_002078_470 Hb_002078_470 Hb_004586_090--Hb_002078_470 Hb_000844_050 Hb_000844_050 Hb_004586_090--Hb_000844_050 Hb_003581_130 Hb_003581_130 Hb_000015_200--Hb_003581_130 Hb_001507_050 Hb_001507_050 Hb_000015_200--Hb_001507_050 Hb_004375_110 Hb_004375_110 Hb_000015_200--Hb_004375_110 Hb_002686_140 Hb_002686_140 Hb_000015_200--Hb_002686_140 Hb_001414_010 Hb_001414_010 Hb_000015_200--Hb_001414_010 Hb_000452_030 Hb_000452_030 Hb_000015_200--Hb_000452_030 Hb_011925_020 Hb_011925_020 Hb_000271_120--Hb_011925_020 Hb_000205_250 Hb_000205_250 Hb_000271_120--Hb_000205_250 Hb_000049_250 Hb_000049_250 Hb_000271_120--Hb_000049_250 Hb_000220_120 Hb_000220_120 Hb_000271_120--Hb_000220_120 Hb_001006_010 Hb_001006_010 Hb_000271_120--Hb_001006_010 Hb_000258_090--Hb_003964_110 Hb_027760_060 Hb_027760_060 Hb_000258_090--Hb_027760_060 Hb_158845_060 Hb_158845_060 Hb_000258_090--Hb_158845_060 Hb_000258_090--Hb_000599_360 Hb_005504_030 Hb_005504_030 Hb_000258_090--Hb_005504_030 Hb_003964_110--Hb_158845_060 Hb_008165_020 Hb_008165_020 Hb_003964_110--Hb_008165_020 Hb_000227_320 Hb_000227_320 Hb_003964_110--Hb_000227_320 Hb_000331_100 Hb_000331_100 Hb_003964_110--Hb_000331_100 Hb_003964_110--Hb_001414_010 Hb_000665_260 Hb_000665_260 Hb_003964_110--Hb_000665_260 Hb_000599_360--Hb_158845_060 Hb_021977_010 Hb_021977_010 Hb_000599_360--Hb_021977_010 Hb_000599_360--Hb_003964_110 Hb_160608_010 Hb_160608_010 Hb_000599_360--Hb_160608_010 Hb_005741_040 Hb_005741_040 Hb_000599_360--Hb_005741_040 Hb_080147_050 Hb_080147_050 Hb_000599_360--Hb_080147_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.38306 13.4528 14.5287 12.4587 2.87146 3.31848
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.78953 2.21473 4.37728 16.9319 15.0881

CAGE analysis