Hb_000007_440

Information

Type -
Description -
Location Contig7: 397921-406312
Sequence    

Annotation

kegg
ID rcu:RCOM_1464220
description Phospholipid-transporting ATPase, putative (EC:3.6.3.1)
nr
ID XP_012081994.1
description PREDICTED: putative phospholipid-transporting ATPase 9 [Jatropha curcas]
swissprot
ID Q9SX33
description Putative phospholipid-transporting ATPase 9 OS=Arabidopsis thaliana GN=ALA9 PE=3 SV=1
trembl
ID A0A067JZN0
description Phospholipid-transporting ATPase OS=Jatropha curcas GN=JCGZ_18253 PE=3 SV=1
Gene Ontology
ID GO:0016021
description phospholipid-transporting atpase 9

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54773: 397948-402024 , PASA_asmbl_54774: 402028-403906 , PASA_asmbl_54775: 403965-405970
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000007_440 0.0 - - PREDICTED: putative phospholipid-transporting ATPase 9 [Jatropha curcas]
2 Hb_007483_080 0.0724787499 - - hypothetical protein RCOM_0634810 [Ricinus communis]
3 Hb_002849_180 0.0762840505 - - PREDICTED: calmodulin-binding receptor-like cytoplasmic kinase 2 [Jatropha curcas]
4 Hb_002010_100 0.1026305567 - - PREDICTED: uncharacterized protein LOC105633355 [Jatropha curcas]
5 Hb_006483_090 0.1038897727 - - PREDICTED: uncharacterized protein LOC105639979 [Jatropha curcas]
6 Hb_001158_120 0.1066959105 - - PREDICTED: uncharacterized protein LOC105648761 isoform X1 [Jatropha curcas]
7 Hb_006970_170 0.108196404 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
8 Hb_001195_230 0.111178839 - - PREDICTED: 3-ketoacyl-CoA synthase 4 [Jatropha curcas]
9 Hb_000320_450 0.1131145082 - - secretory peroxidase [Hevea brasiliensis]
10 Hb_000477_110 0.1150413066 transcription factor TF Family: GRAS PREDICTED: DELLA protein SLR1-like [Jatropha curcas]
11 Hb_001179_010 0.1150749467 - - PREDICTED: glycosyltransferase family protein 64 protein C5 [Jatropha curcas]
12 Hb_000500_230 0.1159539835 - - hypothetical protein RCOM_0634810 [Ricinus communis]
13 Hb_001357_060 0.1182918889 transcription factor TF Family: Orphans PREDICTED: B-box zinc finger protein 18-like [Cicer arietinum]
14 Hb_001989_070 0.1185940419 - - PREDICTED: uncharacterized calcium-binding protein At1g02270 [Jatropha curcas]
15 Hb_005999_020 0.1194326276 transcription factor TF Family: C2H2 PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like [Jatropha curcas]
16 Hb_001160_020 0.124369158 transcription factor TF Family: NF-YA Nuclear transcription factor Y subunit A-3, putative [Ricinus communis]
17 Hb_002361_010 0.1244571319 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
18 Hb_000329_790 0.1269474134 - - PREDICTED: uncharacterized protein LOC105643367 [Jatropha curcas]
19 Hb_003849_030 0.1283582901 - - hypothetical protein AALP_AA5G029900 [Arabis alpina]
20 Hb_000046_430 0.1286859403 - - hypothetical protein JCGZ_02013 [Jatropha curcas]

Gene co-expression network

sample Hb_000007_440 Hb_000007_440 Hb_007483_080 Hb_007483_080 Hb_000007_440--Hb_007483_080 Hb_002849_180 Hb_002849_180 Hb_000007_440--Hb_002849_180 Hb_002010_100 Hb_002010_100 Hb_000007_440--Hb_002010_100 Hb_006483_090 Hb_006483_090 Hb_000007_440--Hb_006483_090 Hb_001158_120 Hb_001158_120 Hb_000007_440--Hb_001158_120 Hb_006970_170 Hb_006970_170 Hb_000007_440--Hb_006970_170 Hb_007483_080--Hb_002010_100 Hb_002361_010 Hb_002361_010 Hb_007483_080--Hb_002361_010 Hb_007483_080--Hb_002849_180 Hb_007483_080--Hb_001158_120 Hb_000500_230 Hb_000500_230 Hb_007483_080--Hb_000500_230 Hb_000320_450 Hb_000320_450 Hb_002849_180--Hb_000320_450 Hb_002849_180--Hb_006483_090 Hb_000613_250 Hb_000613_250 Hb_002849_180--Hb_000613_250 Hb_012308_050 Hb_012308_050 Hb_002849_180--Hb_012308_050 Hb_002010_100--Hb_002361_010 Hb_005016_080 Hb_005016_080 Hb_002010_100--Hb_005016_080 Hb_005463_070 Hb_005463_070 Hb_002010_100--Hb_005463_070 Hb_000318_050 Hb_000318_050 Hb_002010_100--Hb_000318_050 Hb_000365_180 Hb_000365_180 Hb_002010_100--Hb_000365_180 Hb_000477_110 Hb_000477_110 Hb_006483_090--Hb_000477_110 Hb_006269_010 Hb_006269_010 Hb_006483_090--Hb_006269_010 Hb_001153_090 Hb_001153_090 Hb_006483_090--Hb_001153_090 Hb_006483_090--Hb_007483_080 Hb_011381_070 Hb_011381_070 Hb_001158_120--Hb_011381_070 Hb_000366_050 Hb_000366_050 Hb_001158_120--Hb_000366_050 Hb_001294_040 Hb_001294_040 Hb_001158_120--Hb_001294_040 Hb_002609_290 Hb_002609_290 Hb_001158_120--Hb_002609_290 Hb_005539_100 Hb_005539_100 Hb_001158_120--Hb_005539_100 Hb_002871_110 Hb_002871_110 Hb_006970_170--Hb_002871_110 Hb_006970_170--Hb_000500_230 Hb_007894_120 Hb_007894_120 Hb_006970_170--Hb_007894_120 Hb_000010_370 Hb_000010_370 Hb_006970_170--Hb_000010_370 Hb_030982_050 Hb_030982_050 Hb_006970_170--Hb_030982_050 Hb_003849_030 Hb_003849_030 Hb_006970_170--Hb_003849_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.985292 24.2722 27.7492 18.9296 0.253822 1.74333
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.239926 0.279733 0.376876 12.5742 19.9632

CAGE analysis