Hb_000008_040

Information

Type -
Description -
Location Contig8: 15171-17027
Sequence    

Annotation

kegg
ID pop:POPTR_0009s01550g
description POPTRDRAFT_558276; hypothetical protein
nr
ID XP_002313523.1
description hypothetical protein POPTR_0009s01550g [Populus trichocarpa]
swissprot
ID O64825
description LysM domain receptor-like kinase 4 OS=Arabidopsis thaliana GN=LYK4 PE=1 SV=1
trembl
ID B9HQC6
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s01550g PE=4 SV=1
Gene Ontology
ID GO:0004672
description lysm domain receptor-like kinase 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58647: 15831-16277
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000008_040 0.0 - - hypothetical protein POPTR_0009s01550g [Populus trichocarpa]
2 Hb_000805_330 0.1592057598 - - PREDICTED: ricin-like [Elaeis guineensis]
3 Hb_002869_040 0.1677539764 - - PREDICTED: metal tolerance protein 4 [Jatropha curcas]
4 Hb_064773_010 0.1688882436 - - PREDICTED: uncharacterized protein LOC103699620, partial [Phoenix dactylifera]
5 Hb_000120_100 0.1689050497 - - -
6 Hb_004668_030 0.1691284409 - - PREDICTED: vacuolar amino acid transporter 1-like [Jatropha curcas]
7 Hb_020301_050 0.1691571136 - - conserved hypothetical protein [Ricinus communis]
8 Hb_041849_010 0.1693630544 - - beta-glucosidase, putative [Ricinus communis]
9 Hb_078439_010 0.169363766 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
10 Hb_022264_010 0.1717775464 - - PREDICTED: uncharacterized protein LOC105795741 [Gossypium raimondii]
11 Hb_169511_020 0.1724265705 - - PREDICTED: uncharacterized protein LOC105037523, partial [Elaeis guineensis]
12 Hb_014214_010 0.1726311704 - - PREDICTED: cationic amino acid transporter 6, chloroplastic-like [Jatropha curcas]
13 Hb_003910_030 0.17333625 - - PREDICTED: probable disease resistance protein At5g66910 [Populus euphratica]
14 Hb_000953_160 0.1734261777 transcription factor TF Family: ERF Dehydration-responsive element-binding protein 1B, putative [Ricinus communis]
15 Hb_061641_010 0.1737716398 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
16 Hb_004077_010 0.1744056674 - - retinoblastoma-binding protein, putative [Ricinus communis]
17 Hb_103659_010 0.1746203495 - - conserved hypothetical protein [Ricinus communis]
18 Hb_161954_010 0.1746252531 - - hypothetical protein JCGZ_05404 [Jatropha curcas]
19 Hb_000983_180 0.1756893071 - - cytochrome P450, putative [Ricinus communis]
20 Hb_001975_060 0.1766063871 - - hypothetical protein JCGZ_11079 [Jatropha curcas]

Gene co-expression network

sample Hb_000008_040 Hb_000008_040 Hb_000805_330 Hb_000805_330 Hb_000008_040--Hb_000805_330 Hb_002869_040 Hb_002869_040 Hb_000008_040--Hb_002869_040 Hb_064773_010 Hb_064773_010 Hb_000008_040--Hb_064773_010 Hb_000120_100 Hb_000120_100 Hb_000008_040--Hb_000120_100 Hb_004668_030 Hb_004668_030 Hb_000008_040--Hb_004668_030 Hb_020301_050 Hb_020301_050 Hb_000008_040--Hb_020301_050 Hb_007304_100 Hb_007304_100 Hb_000805_330--Hb_007304_100 Hb_000318_320 Hb_000318_320 Hb_000805_330--Hb_000318_320 Hb_008725_190 Hb_008725_190 Hb_000805_330--Hb_008725_190 Hb_005183_010 Hb_005183_010 Hb_000805_330--Hb_005183_010 Hb_007007_110 Hb_007007_110 Hb_000805_330--Hb_007007_110 Hb_001957_050 Hb_001957_050 Hb_002869_040--Hb_001957_050 Hb_000167_090 Hb_000167_090 Hb_002869_040--Hb_000167_090 Hb_003012_010 Hb_003012_010 Hb_002869_040--Hb_003012_010 Hb_002548_010 Hb_002548_010 Hb_002869_040--Hb_002548_010 Hb_006590_030 Hb_006590_030 Hb_002869_040--Hb_006590_030 Hb_000373_110 Hb_000373_110 Hb_002869_040--Hb_000373_110 Hb_064773_010--Hb_000120_100 Hb_064773_010--Hb_004668_030 Hb_064773_010--Hb_020301_050 Hb_041849_010 Hb_041849_010 Hb_064773_010--Hb_041849_010 Hb_078439_010 Hb_078439_010 Hb_064773_010--Hb_078439_010 Hb_022264_010 Hb_022264_010 Hb_064773_010--Hb_022264_010 Hb_000120_100--Hb_004668_030 Hb_000120_100--Hb_020301_050 Hb_000120_100--Hb_078439_010 Hb_000120_100--Hb_041849_010 Hb_169511_020 Hb_169511_020 Hb_000120_100--Hb_169511_020 Hb_004668_030--Hb_020301_050 Hb_004668_030--Hb_078439_010 Hb_004668_030--Hb_041849_010 Hb_004668_030--Hb_169511_020 Hb_020301_050--Hb_078439_010 Hb_020301_050--Hb_041849_010 Hb_020301_050--Hb_169511_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.01078 0.589945 0 0.715983 0.051167 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0153575 0

CAGE analysis