Hb_000008_070

Information

Type -
Description -
Location Contig8: 65433-72250
Sequence    

Annotation

kegg
ID rcu:RCOM_0033790
description kinase, putative (EC:2.7.11.30)
nr
ID XP_002529929.1
description kinase, putative [Ricinus communis]
swissprot
ID Q8VYY5
description Receptor-like serine/threonine-protein kinase NCRK OS=Arabidopsis thaliana GN=NCRK PE=1 SV=1
trembl
ID B9SVB0
description Kinase, putative OS=Ricinus communis GN=RCOM_0033790 PE=3 SV=1
Gene Ontology
ID GO:0004672
description receptor-like serine threonine-protein kinase ncrk

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58653: 65466-72438
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000008_070 0.0 - - kinase, putative [Ricinus communis]
2 Hb_001257_050 0.0971466918 - - PREDICTED: LOW QUALITY PROTEIN: protein YLS9 [Jatropha curcas]
3 Hb_000139_060 0.1071347928 - - Photosystem I reaction center subunit II, chloroplast precursor, putative [Ricinus communis]
4 Hb_001278_020 0.1080518964 - - sucrose synthase 6 [Hevea brasiliensis]
5 Hb_001541_200 0.1147139853 - - PREDICTED: BTB/POZ domain-containing protein At1g67900-like isoform X1 [Citrus sinensis]
6 Hb_002246_030 0.1159572859 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
7 Hb_001474_060 0.1196248414 transcription factor TF Family: ARF PREDICTED: auxin response factor 16 [Jatropha curcas]
8 Hb_000031_180 0.1207268005 - - sarcosine oxidase, putative [Ricinus communis]
9 Hb_001210_060 0.1239776213 - - PREDICTED: pleiotropic drug resistance protein 1-like [Jatropha curcas]
10 Hb_005532_030 0.1252539675 - - DNA binding protein, putative [Ricinus communis]
11 Hb_000904_120 0.1261312956 - - conserved hypothetical protein [Ricinus communis]
12 Hb_005295_020 0.126991111 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Populus euphratica]
13 Hb_001699_080 0.1289627498 - - unnamed protein product [Coffea canephora]
14 Hb_001999_070 0.1301576976 - - PREDICTED: ammonium transporter 1 member 3 [Jatropha curcas]
15 Hb_000083_210 0.130230808 - - Major facilitator superfamily protein, putative [Theobroma cacao]
16 Hb_000661_270 0.1304899254 desease resistance Gene Name: ABC_tran ABC transporter family protein [Hevea brasiliensis]
17 Hb_026549_060 0.1311043506 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
18 Hb_000005_370 0.1316699552 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105634024 [Jatropha curcas]
19 Hb_000103_130 0.1318784477 - - PREDICTED: protein NETWORKED 1A [Jatropha curcas]
20 Hb_006075_030 0.131902706 - - PREDICTED: uncharacterized protein LOC105641890 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000008_070 Hb_000008_070 Hb_001257_050 Hb_001257_050 Hb_000008_070--Hb_001257_050 Hb_000139_060 Hb_000139_060 Hb_000008_070--Hb_000139_060 Hb_001278_020 Hb_001278_020 Hb_000008_070--Hb_001278_020 Hb_001541_200 Hb_001541_200 Hb_000008_070--Hb_001541_200 Hb_002246_030 Hb_002246_030 Hb_000008_070--Hb_002246_030 Hb_001474_060 Hb_001474_060 Hb_000008_070--Hb_001474_060 Hb_003929_240 Hb_003929_240 Hb_001257_050--Hb_003929_240 Hb_001257_050--Hb_001474_060 Hb_001257_050--Hb_000139_060 Hb_000005_370 Hb_000005_370 Hb_001257_050--Hb_000005_370 Hb_001257_050--Hb_001541_200 Hb_008226_010 Hb_008226_010 Hb_000139_060--Hb_008226_010 Hb_000139_060--Hb_001541_200 Hb_001557_010 Hb_001557_010 Hb_000139_060--Hb_001557_010 Hb_005066_040 Hb_005066_040 Hb_000139_060--Hb_005066_040 Hb_001657_020 Hb_001657_020 Hb_000139_060--Hb_001657_020 Hb_000661_270 Hb_000661_270 Hb_001278_020--Hb_000661_270 Hb_000358_090 Hb_000358_090 Hb_001278_020--Hb_000358_090 Hb_001278_020--Hb_001541_200 Hb_001278_020--Hb_001657_020 Hb_005295_020 Hb_005295_020 Hb_001278_020--Hb_005295_020 Hb_001541_200--Hb_001657_020 Hb_026549_060 Hb_026549_060 Hb_001541_200--Hb_026549_060 Hb_020956_030 Hb_020956_030 Hb_001541_200--Hb_020956_030 Hb_001433_090 Hb_001433_090 Hb_001541_200--Hb_001433_090 Hb_005183_050 Hb_005183_050 Hb_001541_200--Hb_005183_050 Hb_003162_060 Hb_003162_060 Hb_001541_200--Hb_003162_060 Hb_102179_010 Hb_102179_010 Hb_002246_030--Hb_102179_010 Hb_005694_160 Hb_005694_160 Hb_002246_030--Hb_005694_160 Hb_001047_210 Hb_001047_210 Hb_002246_030--Hb_001047_210 Hb_000500_240 Hb_000500_240 Hb_002246_030--Hb_000500_240 Hb_004835_020 Hb_004835_020 Hb_002246_030--Hb_004835_020 Hb_002246_030--Hb_026549_060 Hb_001474_060--Hb_000005_370 Hb_010810_060 Hb_010810_060 Hb_001474_060--Hb_010810_060 Hb_005730_060 Hb_005730_060 Hb_001474_060--Hb_005730_060 Hb_019654_180 Hb_019654_180 Hb_001474_060--Hb_019654_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.10979 5.02886 19.4872 34.6707 0.287103 2.63489
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.35221 0.0652086 0.185854 1.97675 46.9229

CAGE analysis