Hb_000008_160

Information

Type -
Description -
Location Contig8: 202244-205444
Sequence    

Annotation

kegg
ID rcu:RCOM_0034230
description carboxy-lyase, putative
nr
ID XP_002529933.1
description carboxy-lyase, putative [Ricinus communis]
swissprot
ID Q8RUN2
description Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG1 OS=Arabidopsis thaliana GN=LOG1 PE=1 SV=1
trembl
ID B9SVB4
description Carboxy-lyase, putative OS=Ricinus communis GN=RCOM_0034230 PE=4 SV=1
Gene Ontology
ID GO:0005829
description cytokinin riboside 5 -monophosphate phosphoribohydrolase log1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58662: 202256-205615 , PASA_asmbl_58663: 202641-202828
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000008_160 0.0 - - carboxy-lyase, putative [Ricinus communis]
2 Hb_002093_020 0.0657972905 - - hypothetical protein POPTR_0008s02960g [Populus trichocarpa]
3 Hb_000185_010 0.0691063161 - - Alliin lyase precursor, putative [Ricinus communis]
4 Hb_001751_050 0.0730962203 - - PREDICTED: phytol kinase 1, chloroplastic [Jatropha curcas]
5 Hb_002870_070 0.0747214528 - - multidrug resistance pump, putative [Ricinus communis]
6 Hb_002762_050 0.0780658443 - - PREDICTED: uncharacterized protein LOC105640359 [Jatropha curcas]
7 Hb_087599_010 0.0830565478 - - PREDICTED: tropinone reductase homolog [Solanum tuberosum]
8 Hb_001006_160 0.0852000522 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
9 Hb_012807_030 0.0867853899 - - PREDICTED: uncharacterized protein LOC105628042 isoform X1 [Jatropha curcas]
10 Hb_002162_020 0.0874082179 - - hypothetical protein JCGZ_21655 [Jatropha curcas]
11 Hb_000002_140 0.0880018245 - - hypothetical protein JCGZ_02318 [Jatropha curcas]
12 Hb_001710_010 0.0888874742 - - Uncharacterized protein TCM_001832 [Theobroma cacao]
13 Hb_002592_040 0.0892953797 - - ACC oxidase 3 [Hevea brasiliensis]
14 Hb_000069_760 0.0894221701 - - PREDICTED: protein CURVATURE THYLAKOID 1A, chloroplastic [Jatropha curcas]
15 Hb_001856_240 0.090111576 transcription factor TF Family: TCP Plastid transcription factor 1, putative isoform 1 [Theobroma cacao]
16 Hb_005276_080 0.092706019 - - PREDICTED: chloroplast stem-loop binding protein of 41 kDa a, chloroplastic [Jatropha curcas]
17 Hb_000047_100 0.0929425118 transcription factor TF Family: GRF conserved hypothetical protein [Ricinus communis]
18 Hb_009193_020 0.0968680961 - - PREDICTED: epoxide hydrolase 3 [Jatropha curcas]
19 Hb_140249_020 0.0977591985 transcription factor TF Family: MIKC PREDICTED: MADS-box protein CMB1-like [Jatropha curcas]
20 Hb_156093_010 0.0991578987 - - hypothetical protein RCOM_0504250 [Ricinus communis]

Gene co-expression network

sample Hb_000008_160 Hb_000008_160 Hb_002093_020 Hb_002093_020 Hb_000008_160--Hb_002093_020 Hb_000185_010 Hb_000185_010 Hb_000008_160--Hb_000185_010 Hb_001751_050 Hb_001751_050 Hb_000008_160--Hb_001751_050 Hb_002870_070 Hb_002870_070 Hb_000008_160--Hb_002870_070 Hb_002762_050 Hb_002762_050 Hb_000008_160--Hb_002762_050 Hb_087599_010 Hb_087599_010 Hb_000008_160--Hb_087599_010 Hb_002093_020--Hb_001751_050 Hb_002093_020--Hb_087599_010 Hb_001766_160 Hb_001766_160 Hb_002093_020--Hb_001766_160 Hb_000531_100 Hb_000531_100 Hb_002093_020--Hb_000531_100 Hb_005276_080 Hb_005276_080 Hb_002093_020--Hb_005276_080 Hb_000069_760 Hb_000069_760 Hb_000185_010--Hb_000069_760 Hb_000012_370 Hb_000012_370 Hb_000185_010--Hb_000012_370 Hb_000185_010--Hb_087599_010 Hb_156093_010 Hb_156093_010 Hb_000185_010--Hb_156093_010 Hb_006132_080 Hb_006132_080 Hb_000185_010--Hb_006132_080 Hb_001751_050--Hb_000531_100 Hb_013726_060 Hb_013726_060 Hb_001751_050--Hb_013726_060 Hb_001751_050--Hb_005276_080 Hb_001751_050--Hb_001766_160 Hb_004871_030 Hb_004871_030 Hb_002870_070--Hb_004871_030 Hb_001856_240 Hb_001856_240 Hb_002870_070--Hb_001856_240 Hb_002870_070--Hb_000185_010 Hb_002870_070--Hb_000069_760 Hb_003847_070 Hb_003847_070 Hb_002870_070--Hb_003847_070 Hb_002762_050--Hb_087599_010 Hb_012807_030 Hb_012807_030 Hb_002762_050--Hb_012807_030 Hb_000694_080 Hb_000694_080 Hb_002762_050--Hb_000694_080 Hb_003777_080 Hb_003777_080 Hb_002762_050--Hb_003777_080 Hb_002762_050--Hb_156093_010 Hb_087599_010--Hb_000694_080 Hb_087599_010--Hb_003777_080 Hb_153258_040 Hb_153258_040 Hb_087599_010--Hb_153258_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.424982 29.7633 8.023 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.103891 0 1.93328 48.0424

CAGE analysis