Hb_000008_200

Information

Type transcription factor
Description TF Family: C2C2-GATA
Location Contig8: 283386-288708
Sequence    

Annotation

kegg
ID rcu:RCOM_0034600
description GATA transcription factor, putative
nr
ID XP_012064808.1
description PREDICTED: GATA transcription factor 11 [Jatropha curcas]
swissprot
ID Q6DBP8
description GATA transcription factor 11 OS=Arabidopsis thaliana GN=GATA11 PE=2 SV=1
trembl
ID A0A067LHG2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05507 PE=4 SV=1
Gene Ontology
ID GO:0003700
description gata transcription factor 11-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58669: 283402-288759 , PASA_asmbl_58670: 283407-288759 , PASA_asmbl_58671: 283889-284360
cDNA
(Sanger)
(ID:Location)		 030_C23.ab1: 283407-287737

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000008_200 0.0 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 11 [Jatropha curcas]
2 Hb_005568_020 0.0882230624 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor RAP2-7 isoform X1 [Jatropha curcas]
3 Hb_008511_040 0.0946235801 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
4 Hb_003606_050 0.102591335 - - PREDICTED: beta-galactosidase 10 [Jatropha curcas]
5 Hb_091318_010 0.1039461735 - - hypothetical protein POPTR_0001s09520g [Populus trichocarpa]
6 Hb_001268_160 0.1105225757 - - Glycerophosphodiester phosphodiesterase [Medicago truncatula]
7 Hb_000735_060 0.1116734127 - - PREDICTED: U-box domain-containing protein 9 [Jatropha curcas]
8 Hb_000243_060 0.1152127845 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 5-like [Jatropha curcas]
9 Hb_004855_020 0.1162154096 - - hypothetical protein POPTR_0006s10010g [Populus trichocarpa]
10 Hb_010381_040 0.1182919369 - - beta-galactosidase, putative [Ricinus communis]
11 Hb_002311_280 0.119135117 - - PREDICTED: probable polygalacturonase [Jatropha curcas]
12 Hb_000207_350 0.1195467998 - - PREDICTED: embryogenesis-associated protein EMB8 [Jatropha curcas]
13 Hb_002078_390 0.1220254927 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 2 [Jatropha curcas]
14 Hb_000027_170 0.1281991744 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g68400 [Jatropha curcas]
15 Hb_001104_150 0.1312146825 - - PREDICTED: protein ROS1 [Jatropha curcas]
16 Hb_001054_040 0.131377824 - - hypothetical protein JCGZ_25310 [Jatropha curcas]
17 Hb_006133_020 0.1337895896 - - PREDICTED: DNA (cytosine-5)-methyltransferase DRM2 [Jatropha curcas]
18 Hb_007101_260 0.1340317211 - - altered response to gravity (arg1), plant, putative [Ricinus communis]
19 Hb_001123_310 0.1350119487 - - PREDICTED: coiled-coil domain-containing protein SCD2 [Jatropha curcas]
20 Hb_000023_110 0.1365278564 - - PREDICTED: probable methyltransferase PMT21 [Jatropha curcas]

Gene co-expression network

sample Hb_000008_200 Hb_000008_200 Hb_005568_020 Hb_005568_020 Hb_000008_200--Hb_005568_020 Hb_008511_040 Hb_008511_040 Hb_000008_200--Hb_008511_040 Hb_003606_050 Hb_003606_050 Hb_000008_200--Hb_003606_050 Hb_091318_010 Hb_091318_010 Hb_000008_200--Hb_091318_010 Hb_001268_160 Hb_001268_160 Hb_000008_200--Hb_001268_160 Hb_000735_060 Hb_000735_060 Hb_000008_200--Hb_000735_060 Hb_005568_020--Hb_000735_060 Hb_002078_390 Hb_002078_390 Hb_005568_020--Hb_002078_390 Hb_005568_020--Hb_003606_050 Hb_128196_010 Hb_128196_010 Hb_005568_020--Hb_128196_010 Hb_000207_350 Hb_000207_350 Hb_005568_020--Hb_000207_350 Hb_006133_020 Hb_006133_020 Hb_008511_040--Hb_006133_020 Hb_000069_300 Hb_000069_300 Hb_008511_040--Hb_000069_300 Hb_000227_400 Hb_000227_400 Hb_008511_040--Hb_000227_400 Hb_001922_110 Hb_001922_110 Hb_008511_040--Hb_001922_110 Hb_001123_310 Hb_001123_310 Hb_008511_040--Hb_001123_310 Hb_003606_050--Hb_000735_060 Hb_001085_190 Hb_001085_190 Hb_003606_050--Hb_001085_190 Hb_001188_050 Hb_001188_050 Hb_003606_050--Hb_001188_050 Hb_001936_180 Hb_001936_180 Hb_003606_050--Hb_001936_180 Hb_029253_010 Hb_029253_010 Hb_091318_010--Hb_029253_010 Hb_004679_040 Hb_004679_040 Hb_091318_010--Hb_004679_040 Hb_005357_110 Hb_005357_110 Hb_091318_010--Hb_005357_110 Hb_000032_410 Hb_000032_410 Hb_091318_010--Hb_000032_410 Hb_000915_130 Hb_000915_130 Hb_091318_010--Hb_000915_130 Hb_001408_170 Hb_001408_170 Hb_001268_160--Hb_001408_170 Hb_010381_040 Hb_010381_040 Hb_001268_160--Hb_010381_040 Hb_008053_030 Hb_008053_030 Hb_001268_160--Hb_008053_030 Hb_001401_040 Hb_001401_040 Hb_001268_160--Hb_001401_040 Hb_017439_010 Hb_017439_010 Hb_001268_160--Hb_017439_010 Hb_022092_110 Hb_022092_110 Hb_000735_060--Hb_022092_110 Hb_000735_060--Hb_001936_180 Hb_000418_170 Hb_000418_170 Hb_000735_060--Hb_000418_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.76721 8.00054 27.5414 30.2618 0.703209 0.540567
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.72853 2.14023 1.05039 4.72899 14.9753

CAGE analysis