Hb_000008_250

Information

Type -
Description -
Location Contig8: 349405-353151
Sequence    

Annotation

kegg
ID rcu:RCOM_0034740
description hypothetical protein
nr
ID XP_002529944.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9SKN3
description CASP-like protein 5A2 OS=Arabidopsis thaliana GN=At2g28370 PE=2 SV=1
trembl
ID B9SVC5
description CASP-like protein OS=Ricinus communis GN=RCOM_0034740 PE=3 SV=1
Gene Ontology
ID GO:0005886
description casp-like protein 5a2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58680: 349559-352961
cDNA
(Sanger)
(ID:Location)		 043_H18.ab1: 349627-352540 , 043_N14.ab1: 349627-352577

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000008_250 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001538_110 0.0919283143 - - PREDICTED: histone deacetylase 6, partial [Oryzias latipes]
3 Hb_000436_050 0.0931217871 - - PREDICTED: INO80 complex subunit C [Jatropha curcas]
4 Hb_000291_210 0.1080505522 transcription factor TF Family: bZIP DNA binding protein, putative [Ricinus communis]
5 Hb_005955_020 0.1158300238 - - ring finger containing protein, putative [Ricinus communis]
6 Hb_000402_200 0.1169639741 - - PREDICTED: uncharacterized protein LOC105644655 [Jatropha curcas]
7 Hb_000634_100 0.1207710744 - - hypothetical protein PRUPE_ppa013350mg [Prunus persica]
8 Hb_002205_080 0.122361154 - - 40S ribosomal protein S26, putative [Ricinus communis]
9 Hb_001257_080 0.1234912006 - - conserved hypothetical protein [Ricinus communis]
10 Hb_009404_020 0.1246063386 - - conserved hypothetical protein [Ricinus communis]
11 Hb_034299_060 0.1252127337 transcription factor TF Family: Orphans PREDICTED: two-component response regulator ARR5 [Jatropha curcas]
12 Hb_089140_100 0.1282783272 - - PREDICTED: F-box/LRR-repeat protein 4 [Jatropha curcas]
13 Hb_000085_310 0.1283149109 - - hypothetical protein JCGZ_00974 [Jatropha curcas]
14 Hb_000703_140 0.1293414978 - - transcription initiation factor TFIID subunit 13-like [Jatropha curcas]
15 Hb_054127_040 0.1312205551 - - PREDICTED: 2-hydroxyacyl-CoA lyase [Jatropha curcas]
16 Hb_002716_070 0.1324124054 - - PREDICTED: protein ABIL2 [Jatropha curcas]
17 Hb_000326_010 0.1329264725 - - hypothetical protein POPTR_0009s11870g [Populus trichocarpa]
18 Hb_023386_080 0.1339289665 - - PREDICTED: peroxisome biogenesis protein 19-2-like [Jatropha curcas]
19 Hb_000270_270 0.1346085025 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH79-like isoform X1 [Jatropha curcas]
20 Hb_021443_070 0.1350117742 - - PREDICTED: cysteine and histidine-rich domain-containing protein RAR1 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000008_250 Hb_000008_250 Hb_001538_110 Hb_001538_110 Hb_000008_250--Hb_001538_110 Hb_000436_050 Hb_000436_050 Hb_000008_250--Hb_000436_050 Hb_000291_210 Hb_000291_210 Hb_000008_250--Hb_000291_210 Hb_005955_020 Hb_005955_020 Hb_000008_250--Hb_005955_020 Hb_000402_200 Hb_000402_200 Hb_000008_250--Hb_000402_200 Hb_000634_100 Hb_000634_100 Hb_000008_250--Hb_000634_100 Hb_089140_100 Hb_089140_100 Hb_001538_110--Hb_089140_100 Hb_002918_200 Hb_002918_200 Hb_001538_110--Hb_002918_200 Hb_000648_060 Hb_000648_060 Hb_001538_110--Hb_000648_060 Hb_002716_070 Hb_002716_070 Hb_001538_110--Hb_002716_070 Hb_004837_140 Hb_004837_140 Hb_001538_110--Hb_004837_140 Hb_000436_050--Hb_000634_100 Hb_000056_340 Hb_000056_340 Hb_000436_050--Hb_000056_340 Hb_000436_050--Hb_000291_210 Hb_002205_080 Hb_002205_080 Hb_000436_050--Hb_002205_080 Hb_023386_080 Hb_023386_080 Hb_000436_050--Hb_023386_080 Hb_006452_060 Hb_006452_060 Hb_000291_210--Hb_006452_060 Hb_002973_080 Hb_002973_080 Hb_000291_210--Hb_002973_080 Hb_000291_210--Hb_000634_100 Hb_000291_210--Hb_000402_200 Hb_004650_070 Hb_004650_070 Hb_005955_020--Hb_004650_070 Hb_026988_020 Hb_026988_020 Hb_005955_020--Hb_026988_020 Hb_005955_020--Hb_001538_110 Hb_005357_150 Hb_005357_150 Hb_005955_020--Hb_005357_150 Hb_000085_310 Hb_000085_310 Hb_005955_020--Hb_000085_310 Hb_021068_050 Hb_021068_050 Hb_000402_200--Hb_021068_050 Hb_001439_120 Hb_001439_120 Hb_000402_200--Hb_001439_120 Hb_001143_170 Hb_001143_170 Hb_000402_200--Hb_001143_170 Hb_010638_020 Hb_010638_020 Hb_000402_200--Hb_010638_020 Hb_018790_060 Hb_018790_060 Hb_000402_200--Hb_018790_060 Hb_022216_020 Hb_022216_020 Hb_000402_200--Hb_022216_020 Hb_003376_120 Hb_003376_120 Hb_000634_100--Hb_003376_120 Hb_000634_100--Hb_023386_080 Hb_000329_040 Hb_000329_040 Hb_000634_100--Hb_000329_040 Hb_005333_130 Hb_005333_130 Hb_000634_100--Hb_005333_130 Hb_003408_030 Hb_003408_030 Hb_000634_100--Hb_003408_030 Hb_044662_070 Hb_044662_070 Hb_000634_100--Hb_044662_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
58.4922 13.7419 18.2108 19.8644 109.519 33.1535
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
112.654 122.266 90.2536 19.4559 15.9051

CAGE analysis