Hb_000008_260

Information

Type -
Description -
Location Contig8: 353710-354784
Sequence    

Annotation

kegg
ID rcu:RCOM_0034750
description hypothetical protein
nr
ID XP_002529945.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SVC6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0034750 PE=4 SV=1
Gene Ontology
ID GO:0016020
description conserved hypothetical protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58680: 349559-352961
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000008_260 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_009467_030 0.0238393171 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ATX4 [Jatropha curcas]
3 Hb_102438_010 0.0819698869 - - -
4 Hb_004917_050 0.1322857471 - - -
5 Hb_007904_270 0.1893381918 - - -
6 Hb_000979_050 0.2118470444 - - -
7 Hb_159085_010 0.2179868848 - - -
8 Hb_001386_080 0.2186736161 - - hypothetical protein JCGZ_06052 [Jatropha curcas]
9 Hb_001787_040 0.2207665301 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
10 Hb_008092_140 0.2214315291 - - PREDICTED: uncharacterized protein LOC103636948 [Zea mays]
11 Hb_000067_020 0.2377148715 desease resistance Gene Name: NB-ARC PREDICTED: inactive disease resistance protein RPS4-like [Jatropha curcas]
12 Hb_039305_010 0.23783005 - - hypothetical protein JCGZ_18422 [Jatropha curcas]
13 Hb_000270_820 0.2417189583 - - -
14 Hb_005834_030 0.2427679828 - - -
15 Hb_003675_010 0.2440714397 - - Flavonol 3-sulfotransferase, putative [Ricinus communis]
16 Hb_037964_010 0.2474131707 - - hypothetical protein MIMGU_mgv1a000906mg [Erythranthe guttata]
17 Hb_000510_380 0.2483394734 - - -
18 Hb_000482_130 0.2483405685 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
19 Hb_012543_020 0.2483415446 - - -
20 Hb_185616_010 0.2483431103 - - Ran GTPase binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000008_260 Hb_000008_260 Hb_009467_030 Hb_009467_030 Hb_000008_260--Hb_009467_030 Hb_102438_010 Hb_102438_010 Hb_000008_260--Hb_102438_010 Hb_004917_050 Hb_004917_050 Hb_000008_260--Hb_004917_050 Hb_007904_270 Hb_007904_270 Hb_000008_260--Hb_007904_270 Hb_000979_050 Hb_000979_050 Hb_000008_260--Hb_000979_050 Hb_159085_010 Hb_159085_010 Hb_000008_260--Hb_159085_010 Hb_009467_030--Hb_102438_010 Hb_009467_030--Hb_004917_050 Hb_009467_030--Hb_007904_270 Hb_001386_080 Hb_001386_080 Hb_009467_030--Hb_001386_080 Hb_009467_030--Hb_000979_050 Hb_102438_010--Hb_004917_050 Hb_102438_010--Hb_007904_270 Hb_001787_040 Hb_001787_040 Hb_102438_010--Hb_001787_040 Hb_102438_010--Hb_159085_010 Hb_004917_050--Hb_000979_050 Hb_004917_050--Hb_001386_080 Hb_008092_140 Hb_008092_140 Hb_004917_050--Hb_008092_140 Hb_007904_270--Hb_159085_010 Hb_007904_270--Hb_004917_050 Hb_000736_010 Hb_000736_010 Hb_007904_270--Hb_000736_010 Hb_000979_050--Hb_008092_140 Hb_039305_010 Hb_039305_010 Hb_000979_050--Hb_039305_010 Hb_000067_020 Hb_000067_020 Hb_000979_050--Hb_000067_020 Hb_000979_050--Hb_001386_080 Hb_159085_010--Hb_039305_010 Hb_159085_010--Hb_000736_010 Hb_003773_030 Hb_003773_030 Hb_159085_010--Hb_003773_030 Hb_001141_400 Hb_001141_400 Hb_159085_010--Hb_001141_400 Hb_000373_300 Hb_000373_300 Hb_159085_010--Hb_000373_300 Hb_159085_010--Hb_000067_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0.316219 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.57638 0.931752 0 0 0

CAGE analysis