Hb_000008_270

Information

Type transcription factor
Description TF Family: HB
Location Contig8: 355068-363339
Sequence    

Annotation

kegg
ID rcu:RCOM_0034760
description DNA binding protein, putative
nr
ID XP_012064816.1
description PREDICTED: homeobox-leucine zipper protein REVOLUTA [Jatropha curcas]
swissprot
ID Q9SE43
description Homeobox-leucine zipper protein REVOLUTA OS=Arabidopsis thaliana GN=REV PE=1 SV=2
trembl
ID A0A067L6E5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05513 PE=4 SV=1
Gene Ontology
ID GO:0003677
description homeobox-leucine zipper protein revoluta

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58681: 357193-363289 , PASA_asmbl_58682: 355716-360945 , PASA_asmbl_58683: 361901-362117
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000008_270 0.0 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein REVOLUTA [Jatropha curcas]
2 Hb_005227_010 0.068780836 - - PREDICTED: uncharacterized protein LOC105633453 isoform X1 [Jatropha curcas]
3 Hb_017295_010 0.0706561489 - - PREDICTED: uncharacterized membrane protein At1g06890 [Jatropha curcas]
4 Hb_000107_210 0.0877744486 - - PREDICTED: ankyrin repeat domain-containing protein 2 [Jatropha curcas]
5 Hb_001109_060 0.0893827983 - - amino acid transporter, putative [Ricinus communis]
6 Hb_009851_050 0.0919142011 - - PREDICTED: nephrocystin-3 [Jatropha curcas]
7 Hb_009529_030 0.0960970667 - - PREDICTED: transmembrane protein 120 homolog [Jatropha curcas]
8 Hb_001882_050 0.1017178804 - - hydroxysteroid dehydrogenase, putative [Ricinus communis]
9 Hb_001948_130 0.1055881002 - - PREDICTED: uncharacterized protein LOC105638579 [Jatropha curcas]
10 Hb_002785_050 0.1059065659 - - PREDICTED: adenylosuccinate lyase-like [Jatropha curcas]
11 Hb_005946_210 0.1070615887 - - hypothetical protein JCGZ_07228 [Jatropha curcas]
12 Hb_000664_110 0.107948541 - - PREDICTED: monoglyceride lipase [Jatropha curcas]
13 Hb_152202_010 0.1085912643 - - PREDICTED: inositol-tetrakisphosphate 1-kinase 1 [Jatropha curcas]
14 Hb_004223_290 0.1087861706 - - PREDICTED: protein IQ-DOMAIN 32 [Jatropha curcas]
15 Hb_001640_030 0.1102805209 - - PREDICTED: uncharacterized protein LOC105630021 [Jatropha curcas]
16 Hb_000362_150 0.1116692347 - - PREDICTED: homogentisate 1,2-dioxygenase [Jatropha curcas]
17 Hb_002631_070 0.1128147912 - - PREDICTED: uncharacterized membrane protein At1g16860-like [Jatropha curcas]
18 Hb_000345_360 0.1141183618 - - PREDICTED: protein AUXIN RESPONSE 4 [Jatropha curcas]
19 Hb_000780_190 0.1150269877 transcription factor TF Family: Orphans PREDICTED: histidine kinase 2 [Jatropha curcas]
20 Hb_000890_230 0.1153682901 - - hypothetical protein JCGZ_02013 [Jatropha curcas]

Gene co-expression network

sample Hb_000008_270 Hb_000008_270 Hb_005227_010 Hb_005227_010 Hb_000008_270--Hb_005227_010 Hb_017295_010 Hb_017295_010 Hb_000008_270--Hb_017295_010 Hb_000107_210 Hb_000107_210 Hb_000008_270--Hb_000107_210 Hb_001109_060 Hb_001109_060 Hb_000008_270--Hb_001109_060 Hb_009851_050 Hb_009851_050 Hb_000008_270--Hb_009851_050 Hb_009529_030 Hb_009529_030 Hb_000008_270--Hb_009529_030 Hb_005227_010--Hb_001109_060 Hb_000086_440 Hb_000086_440 Hb_005227_010--Hb_000086_440 Hb_005227_010--Hb_017295_010 Hb_002539_110 Hb_002539_110 Hb_005227_010--Hb_002539_110 Hb_162275_040 Hb_162275_040 Hb_005227_010--Hb_162275_040 Hb_017295_010--Hb_000107_210 Hb_017295_010--Hb_009529_030 Hb_002273_120 Hb_002273_120 Hb_017295_010--Hb_002273_120 Hb_017295_010--Hb_001109_060 Hb_058999_030 Hb_058999_030 Hb_000107_210--Hb_058999_030 Hb_006909_070 Hb_006909_070 Hb_000107_210--Hb_006909_070 Hb_000101_380 Hb_000101_380 Hb_000107_210--Hb_000101_380 Hb_000107_210--Hb_005227_010 Hb_012215_010 Hb_012215_010 Hb_000107_210--Hb_012215_010 Hb_001109_060--Hb_000086_440 Hb_001109_060--Hb_162275_040 Hb_000664_110 Hb_000664_110 Hb_001109_060--Hb_000664_110 Hb_005946_210 Hb_005946_210 Hb_001109_060--Hb_005946_210 Hb_002631_070 Hb_002631_070 Hb_009851_050--Hb_002631_070 Hb_009851_050--Hb_017295_010 Hb_003994_280 Hb_003994_280 Hb_009851_050--Hb_003994_280 Hb_028707_080 Hb_028707_080 Hb_009851_050--Hb_028707_080 Hb_009851_050--Hb_009529_030 Hb_009529_030--Hb_002273_120 Hb_000362_150 Hb_000362_150 Hb_009529_030--Hb_000362_150 Hb_002785_050 Hb_002785_050 Hb_009529_030--Hb_002785_050 Hb_032050_040 Hb_032050_040 Hb_009529_030--Hb_032050_040 Hb_000345_360 Hb_000345_360 Hb_009529_030--Hb_000345_360
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.6547 10.7269 10.6129 31.3676 23.0781 22.7228
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.18869 10.0651 9.19674 10.7423 21.7563

CAGE analysis