Hb_000008_280

Information

Type -
Description -
Location Contig8: 377188-381763
Sequence    

Annotation

kegg
ID rcu:RCOM_0035170
description double-stranded RNA binding protein, putative
nr
ID XP_012064817.1
description PREDICTED: double-stranded RNA-binding protein 2 [Jatropha curcas]
swissprot
ID Q9SKN2
description Double-stranded RNA-binding protein 2 OS=Arabidopsis thaliana GN=DRB2 PE=1 SV=1
trembl
ID A0A067L6J3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05514 PE=4 SV=1
Gene Ontology
ID GO:0003725
description double-stranded rna-binding protein 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58686: 377092-381705
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000008_280 0.0 - - PREDICTED: double-stranded RNA-binding protein 2 [Jatropha curcas]
2 Hb_008642_060 0.0690748503 - - PREDICTED: dynamin-related protein 1E isoform X2 [Jatropha curcas]
3 Hb_013405_180 0.0744552857 - - PREDICTED: uncharacterized protein LOC105648441 [Jatropha curcas]
4 Hb_000300_030 0.0777780314 - - HIV-1 rev binding protein, hrbl, putative [Ricinus communis]
5 Hb_000358_220 0.0791251412 - - PREDICTED: SNW/SKI-interacting protein-like [Jatropha curcas]
6 Hb_000179_190 0.080682486 transcription factor TF Family: Alfin-like PREDICTED: PHD finger protein ALFIN-LIKE 4 isoform X1 [Vitis vinifera]
7 Hb_011457_140 0.0823509117 - - PREDICTED: uncharacterized protein LOC105649947 [Jatropha curcas]
8 Hb_000030_140 0.0827315954 - - PREDICTED: general negative regulator of transcription subunit 3 isoform X1 [Jatropha curcas]
9 Hb_003661_010 0.0841724884 - - PREDICTED: zinc transporter 6, chloroplastic [Jatropha curcas]
10 Hb_002249_030 0.0850507653 - - PREDICTED: chaperone protein ClpC, chloroplastic [Jatropha curcas]
11 Hb_001277_340 0.0858975586 - - aldo/keto reductase, putative [Ricinus communis]
12 Hb_000844_050 0.0882282507 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os01g0723500-like [Jatropha curcas]
13 Hb_000367_020 0.0889801211 - - PREDICTED: uncharacterized protein LOC105640608 [Jatropha curcas]
14 Hb_001178_030 0.0898579684 - - PREDICTED: 1,4-alpha-glucan-branching enzyme 2-2, chloroplastic/amyloplastic [Jatropha curcas]
15 Hb_002248_120 0.0910227823 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 [Jatropha curcas]
16 Hb_002600_070 0.0914172071 transcription factor TF Family: TAZ PREDICTED: histone acetyltransferase HAC12 [Jatropha curcas]
17 Hb_000173_160 0.0919429864 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001998_210 0.0919819638 - - unnamed protein product [Coffea canephora]
19 Hb_005885_030 0.0931970585 desease resistance Gene Name: TIR PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Jatropha curcas]
20 Hb_000684_350 0.0951927019 - - PREDICTED: uncharacterized protein LOC105642163 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000008_280 Hb_000008_280 Hb_008642_060 Hb_008642_060 Hb_000008_280--Hb_008642_060 Hb_013405_180 Hb_013405_180 Hb_000008_280--Hb_013405_180 Hb_000300_030 Hb_000300_030 Hb_000008_280--Hb_000300_030 Hb_000358_220 Hb_000358_220 Hb_000008_280--Hb_000358_220 Hb_000179_190 Hb_000179_190 Hb_000008_280--Hb_000179_190 Hb_011457_140 Hb_011457_140 Hb_000008_280--Hb_011457_140 Hb_008642_060--Hb_011457_140 Hb_008642_060--Hb_000358_220 Hb_003929_210 Hb_003929_210 Hb_008642_060--Hb_003929_210 Hb_008642_060--Hb_000179_190 Hb_000030_140 Hb_000030_140 Hb_008642_060--Hb_000030_140 Hb_002248_120 Hb_002248_120 Hb_013405_180--Hb_002248_120 Hb_000170_160 Hb_000170_160 Hb_013405_180--Hb_000170_160 Hb_000340_360 Hb_000340_360 Hb_013405_180--Hb_000340_360 Hb_001998_210 Hb_001998_210 Hb_013405_180--Hb_001998_210 Hb_001951_100 Hb_001951_100 Hb_013405_180--Hb_001951_100 Hb_003661_010 Hb_003661_010 Hb_000300_030--Hb_003661_010 Hb_005305_100 Hb_005305_100 Hb_000300_030--Hb_005305_100 Hb_001541_150 Hb_001541_150 Hb_000300_030--Hb_001541_150 Hb_001414_010 Hb_001414_010 Hb_000300_030--Hb_001414_010 Hb_000300_030--Hb_011457_140 Hb_000300_030--Hb_000358_220 Hb_000358_220--Hb_011457_140 Hb_000358_220--Hb_003929_210 Hb_170077_010 Hb_170077_010 Hb_000358_220--Hb_170077_010 Hb_000066_150 Hb_000066_150 Hb_000358_220--Hb_000066_150 Hb_000684_350 Hb_000684_350 Hb_000358_220--Hb_000684_350 Hb_000110_350 Hb_000110_350 Hb_000179_190--Hb_000110_350 Hb_017214_040 Hb_017214_040 Hb_000179_190--Hb_017214_040 Hb_000445_060 Hb_000445_060 Hb_000179_190--Hb_000445_060 Hb_000179_190--Hb_003929_210 Hb_000179_190--Hb_005305_100 Hb_000179_190--Hb_170077_010 Hb_010315_020 Hb_010315_020 Hb_011457_140--Hb_010315_020 Hb_000173_160 Hb_000173_160 Hb_011457_140--Hb_000173_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.31686 27.2335 18.63 17.1458 9.40195 8.60823
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.83622 5.34216 5.5815 10.1344 27.5454

CAGE analysis